PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 140aa MW: 16184.7 Da PI: 7.0233 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.7 | 2.7e-10 | 41 | 138 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++++ l sg++++p + + eh++++ + t+tl +g + e+kl +kk gr ++ GW F+k+++L +gD+ +++l++ ++ ++v++ Lus10040408 41 VITASQLHSGNMYFPARITHEHMNEH-FP-TVTLWVFDGeervvvDKKELKLFETKKHGRKYIC-GWIAFCKEHNLVVGDVYLLELVEPETNLFRVRI 135 56788888899********9996553.44.6666666665578886777777556666666665.9********************988888789999 PP E-S CS B3 97 frk 99 fr+ Lus10040408 136 FRH 138 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-15 | 31 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.2E-13 | 32 | 137 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.35E-14 | 36 | 137 | No hit | No description |
SMART | SM01019 | 1.4E-7 | 38 | 139 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-9 | 40 | 138 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MAAMHQAHDR NSRNGLPMPP EMPSPIQETL FSLENPSFLI VITASQLHSG NMYFPARITH 60 EHMNEHFPTV TLWVFDGEER VVVDKKELKL FETKKHGRKY ICGWIAFCKE HNLVVGDVYL 120 LELVEPETNL FRVRIFRHG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040408 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10040408 | 1e-101 | (Linum usitatissimum) |
Link Out ? help Back to Top | |
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Phytozome | Lus10040408 |