PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040403
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARF
Protein Properties Length: 621aa    MW: 68693.5 Da    PI: 7.5685
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040403genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.72.5e-24107208199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF +   +++ 
  Lus10040403 107 FAKQLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGQTWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLR--ADNGD 200
                  89****************************985444444..8999*********************************************3..47888 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Lus10040403 201 LCVGIRRA 208
                  8****997 PP
2Auxin_resp104.71.1e-34255338183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  aa+ a+++ +FevvY+P+a+t+e+ v+++ v++a+++++ +GmRfkm fetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+
  Lus10040403 255 AATLAAKGRPFEVVYYPSAGTPEYWVRASAVRAAMQMQWYPGMRFKMPFETEDSSRISCfMGTISSVQVADPIHWPNSPWRLLQ 338
                  688999*****************************************************9**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-3898212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.76E-30102210IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-22106207No hitNo description
SMARTSM010192.9E-21107209IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338107209IPR003340B3 DNA binding domain
PfamPF023622.7E-22107208IPR003340B3 DNA binding domain
PfamPF065071.0E-29255338IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MKCLDSQFWH ACAGGMVQIP PVSSKVYYFP QGHAEHAQLT ADFAPPSCQI PSMVPCKVSA  60
INYMADPETD EVFAKISLIP LISGSRDDNS SDDGLFESSQ EEKTASFAKQ LTQSDANNGG  120
GFSVPRYCAE TIFPRLDYNA EPPVQTILAK DVHGQTWKFR HIYRGTPRRH LLTTGWSNFV  180
NQKKLVAGDS IVFLRADNGD LCVGIRRARR SEFAPSGWNS YGFMREDYEC RKNVVSNGGD  240
VTMKAKIRSE SVVEAATLAA KGRPFEVVYY PSAGTPEYWV RASAVRAAMQ MQWYPGMRFK  300
MPFETEDSSR ISCFMGTISS VQVADPIHWP NSPWRLLQVE WDEPELLHNV KRVNPWLVEL  360
VSSMPAIHIP PFSPPRKKLR FPQEPDFSLM SQLPLPPFTG NSLRSNNSLL CCVPNTNIPA  420
GIQGARHTHH FDLLPSSDLH FNKLQQQTGQ LLPFGFAPKF TIPTNNVAAK TNCDENVSCL  480
LTIGSSSPKE SSETKKTPHI FLFGQLIVPD HHTSSGSCSG ESSNGNSTSV GNAEKIMITN  540
LSEGSSSSVY QNGPLENSSD AGSPRYKHLT ITNDAGRKLD LSMMGSYKEL NGKLADMLGM  600
ERSRHTGDES FGYRFTNRHS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-80435951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040403
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021651479.10.0auxin response factor 18-like
RefseqXP_021651480.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A251KJ900.0A0A251KJ90_MANES; Auxin response factor
STRINGLus100404030.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]