PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040365
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 477aa    MW: 52331.1 Da    PI: 9.5325
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040365genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17174223155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Lus10040365 174 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 223
                  78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-9174223IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-16174232IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-17175231IPR001471AP2/ERF domain
PROSITE profilePS5103217.978175231IPR001471AP2/ERF domain
CDDcd000186.42E-12175230No hitNo description
SMARTSM003802.4E-32175237IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MSNTNGHRRS NSCLDLNLDI LTPQYDAVST ITPPPSWKKK LKSSSGALLI MEARVPDHDD  60
ADDDNNSAET TSDSSSVIIT ASPPAPCFDF RFDILTKDPD QTTPFPATTR QLFPAEIGGG  120
GSSGLKNCQL AATINNQWLK LSSEVDSSAG GGGEHRPAPA PARKSRRGPR SRSSQYRGVT  180
FYRRTGRWES HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGTDADLNF NLADYEEDMK  240
HMKDLSKEGF VHVLRQQNKG LSRGNSKYKG PGGTFQKCGG WEARMAHHLL VPNKVYDKGA  300
KEYNMNGVAR SSLQLLYPLD RHSHDLDLKL GISTPSHESK KNAMESRVVP YVEKLVNHNK  360
GHFGSQTLNG RPTVLHNFST WPLQSSSLEG SNSNISTAAA RGFSCWTQSV NVAKSDDVAN  420
RDTKCSSTLP IAASSGFPST ATYSPKTQIF DTNYSSTTVH TFQPNQYLYS QKRGRQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040365
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044434.14e-73PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X3
TrEMBLA0A2K1ZBR62e-70A0A2K1ZBR6_POPTR; Uncharacterized protein
STRINGLus100403650.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.27e-54related to AP2.7