PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040274 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 18258.4 Da PI: 5.038 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90 | 3.1e-28 | 2 | 90 | 14 | 101 |
DUF260 14 kdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 ++Cv+apyf +q p++f +vhk+FGasnv+kll +lp + r+da+ +++y+A ar++dP yG+v+ i++lqqq+++ ++e+++l ++l Lus10040274 2 QECVFAPYFSYNQaPSHFGAVHKVFGASNVSKLLLRLPVNFRSDAAITIAYQALARIQDPAYGCVAYIMALQQQVASIQQEIETLSHQL 90 79*********9989********************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.511 | 1 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-26 | 2 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MQECVFAPYF SYNQAPSHFG AVHKVFGASN VSKLLLRLPV NFRSDAAITI AYQALARIQD 60 PAYGCVAYIM ALQQQVASIQ QEIETLSHQL ALNSVTQLAS CGSLPASSAS NYETQIFQQN 120 QQSLQLDNSE HIAGSIEFDS KITSELLSLY GWEDQNPFWN SAHHT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-25 | 1 | 107 | 23 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-25 | 1 | 107 | 23 | 125 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040274 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021683712.1 | 1e-56 | LOB domain-containing protein 33-like | ||||
Swissprot | Q9LHS8 | 3e-36 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A2C9VM86 | 5e-55 | A0A2C9VM86_MANES; Uncharacterized protein | ||||
STRING | Lus10040274 | 1e-119 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-38 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Lus10040274 |
Publications ? help Back to Top | |||
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