PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10040175 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 318aa MW: 34344.5 Da PI: 8.626 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.7 | 2.3e-19 | 136 | 190 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k q +Le+ F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Lus10040175 136 RKKLRLSKGQAAVLEDSFKEHHTLNPKQKSALAKQLGLRPRQVEVWFQNRRARTK 190 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128.6 | 2.5e-41 | 136 | 225 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk q+++LE+sF+e+++L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Lus10040175 136 RKKLRLSKGQAAVLEDSFKEHHTLNPKQKSALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-AL 225 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.0E-22 | 1 | 104 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 5.5E-19 | 118 | 186 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.17E-18 | 119 | 193 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.265 | 132 | 192 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-16 | 134 | 196 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.60E-16 | 136 | 193 | No hit | No description |
Pfam | PF00046 | 1.2E-16 | 136 | 190 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 9.7E-6 | 163 | 172 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 167 | 190 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.7E-6 | 172 | 188 | IPR000047 | Helix-turn-helix motif |
CDD | cd14686 | 6.35E-4 | 183 | 224 | No hit | No description |
SMART | SM00340 | 2.6E-27 | 192 | 235 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.5E-11 | 192 | 226 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAGKQDLRLS LSLATTASFP VHHNSNLQLN LHKPPPPPSS WADTDLIPNP SSGPISEPTR 60 SFLRGIDVNR PPPPATDDCG DDAGVSSPNS TISSVSGNKR SERDEPLGSS DPDADPASSG 120 RAGAGNSDDE DGDTSRKKLR LSKGQAAVLE DSFKEHHTLN PKQKSALAKQ LGLRPRQVEV 180 WFQNRRARTK LKQTEVDCEF LKRCCENLTE ENRRLQKEVQ ELRALKLSPQ FYMHMTPPTT 240 LTMCPSCERV GVPPSTSSSS APMSAQQPPL AAHPSFMGWA HQHRPMTHVN PWAAVAAAAA 300 AASSTAHAPL NLLRPRS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 140 | SRKKLRL |
2 | 184 | 192 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10040175 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU829704 | 1e-126 | EU829704.1 Linum usitatissimum clone LU0006E12 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021639155.1 | 1e-120 | homeobox-leucine zipper protein HAT4-like | ||||
Swissprot | Q05466 | 2e-93 | HAT4_ARATH; Homeobox-leucine zipper protein HAT4 | ||||
TrEMBL | A0A1R3G387 | 1e-117 | A0A1R3G387_9ROSI; Uncharacterized protein | ||||
TrEMBL | A0A1R3GNB1 | 1e-117 | A0A1R3GNB1_COCAP; Uncharacterized protein | ||||
STRING | Lus10040175 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1239 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 5e-89 | homeobox protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10040175 |