PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040167
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 312aa    MW: 34797.2 Da    PI: 4.5639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040167genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-19172222255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdps+ g   r +lg+++++ +Aa+a+++a+ kl+g
  Lus10040167 172 HYRGVRQRP-WGKYAAEIRDPSQKG--SRMWLGTYDSPIDAARAYDRAAFKLRG 222
                  7********.**********97644..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-31171231IPR001471AP2/ERF domain
SMARTSM003801.3E-36172236IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22172231IPR016177DNA-binding domain
PROSITE profilePS5103224.052172230IPR001471AP2/ERF domain
PfamPF008473.0E-12172222IPR001471AP2/ERF domain
CDDcd000181.00E-19172232No hitNo description
PRINTSPR003672.1E-13173184IPR001471AP2/ERF domain
PRINTSPR003672.1E-13212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MADDGLLELQ LQLFDDDHLF FSGSESSSPT TNTFSSNAAS TCGSAISVSD YSFDDYHLEL  60
LDFAKESNDY DILPLDTAPN YPVVIDLTSP ESPIPNPTFI DLESKPKIAS VPPFSLDYLE  120
FETERKLSES NHEPTKWIRF GGDDEDYGIH LVGVEREESR SAAGSNNKEG RHYRGVRQRP  180
WGKYAAEIRD PSQKGSRMWL GTYDSPIDAA RAYDRAAFKL RGRKAILNFP ADAAKYKLLE  240
PTVAAIQEGG NSVDSGRKRR REEDEEEERK VKAAADFPTG ESISSSSSSS RMHMEIWNEI  300
SRRSSDLGVW C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-27169230263ATERF1
3gcc_A5e-27169230263ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256260RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100401670.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.14e-34ERF family protein