PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040166
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 1378aa    MW: 152837 Da    PI: 5.6898
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040166genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS105.29.5e-3397913772374
         GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97  
                   ++lL +  ea++ +++el+ +l++rl+e +sp g+++qR++ ++++AL++  +++ + +           + s +   a+k+f++++P+ kf+h+t
  Lus10040166  979 IHLLKAYGEAMEMNQKELVGELVSRLEEKSSPMGSTLQRVVYHLVRALHHDKNHQPPDML---ML-----EASRNYELAFKAFYQIFPYGKFAHFT 1066
                   68899999******************************************9998444433...22.....234455678899************** PP

         GRAS   98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......................skeeleetgerLakfAe 170 
                   aN+ Ile++  + +++Hi+Dfdi+ G+QWp+L++ L +R+    ++R+T v  ++ +                       +++ e t+  L++ A+
  Lus10040166 1067 ANSVILESLPPSnSTIHIVDFDIGSGVQWPPLMDGLVARRVT--EMRLTLVRWENDDnfdeedndneeedneevssykpARQRFEDTKILLHEHAR 1160
                   *********877699************************876..788888887666677999999*****999999999899999*********** PP

         GRAS  171 elgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrll........desvsleserdevLklvkslsPkvvvvveqe.......adhns 250 
                     g+++      ++++edlele  + ++  E l+ n+++ + ++          + +++ +e    L    s+s  ++++ +         ++  s
  Lus10040166 1161 MAGLKLIV---CESDMEDLELEIRKENQaIEWLVFNCMVGIPHMGegrkakhvVKFLKVGKEYCMELGSSSSTSRGIITFGDGIgwgkglmCEDLS 1253
                   ***99854...4589****88877666689**************9333332221111112222233444455666677777643333334344456 PP

         GRAS  251 esFlerflealeyysalfdsleaklpres....eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 
                   +s+   f   l  + al++s+e  +p +     e+ri +E  ++++ ++++   e    + r+       + l + G+ ++ +++   ++ + +++
  Lus10040166 1254 SSYGSIFEGQLGQFHALMESMEGHMPFDCqqlrEARIAMECLFMRPYVSSIAGFEMWGDIVRES------KELVRLGLDALGMKKGLIEEGREIVK 1343
                   6999999999**************997766677999******9999999999999998666655......8899********************** PP

         GRAS  343 kvksdgyrveee...sgslvlgWkdrpLvsvSaWr 374 
                   + +s  y v +e   +++lvlg kd pL+ vS+Wr
  Lus10040166 1344 EGES-LYWVSNEgvnKNQLVLGYKDTPLFKVSSWR 1377
                   9994.48888666669******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM008311.7E-232597IPR004014Cation-transporting P-type ATPase, N-terminal
SuperFamilySSF816652.88E-8525142No hitNo description
PfamPF006904.6E-142891IPR004014Cation-transporting P-type ATPase, N-terminal
Gene3DG3DSA:2.70.150.109.5E-414276IPR008250P-type ATPase, A domain
TIGRFAMsTIGR01647044828IPR006534P-type ATPase, subfamily IIIA
Gene3DG3DSA:1.20.1110.102.2E-2177136IPR023298P-type ATPase, transmembrane domain
PfamPF001222.7E-59110330IPR008250P-type ATPase, A domain
TIGRFAMsTIGR014941.9E-37111358IPR001757P-type ATPase
Gene3DG3DSA:2.70.150.109.5E-41137240IPR008250P-type ATPase, A domain
SuperFamilySSF816537.98E-29142239No hitNo description
PRINTSPR001193.2E-40189203No hitNo description
SuperFamilySSF816652.88E-85239333No hitNo description
Gene3DG3DSA:1.20.1110.102.2E-21255355IPR023298P-type ATPase, transmembrane domain
SuperFamilySSF567849.74E-38335391IPR023214HAD-like domain
PfamPF007026.5E-19335612No hitNo description
PRINTSPR001193.2E-40339353No hitNo description
PROSITE patternPS001540341347IPR018303P-type ATPase, phosphorylation site
Gene3DG3DSA:3.40.1110.104.0E-33356497IPR023299P-type ATPase, cytoplasmic domain N
SuperFamilySSF567849.74E-38422645IPR023214HAD-like domain
PRINTSPR001201.2E-58455473IPR001757P-type ATPase
PRINTSPR001193.2E-40493504No hitNo description
PRINTSPR001193.2E-40515525No hitNo description
Gene3DG3DSA:1.20.1110.103.4E-98565868IPR023298P-type ATPase, transmembrane domain
PRINTSPR001201.2E-58570586IPR001757P-type ATPase
TIGRFAMsTIGR014941.1E-27573678IPR001757P-type ATPase
PRINTSPR001201.2E-58598614IPR001757P-type ATPase
PRINTSPR001193.2E-40598617No hitNo description
PRINTSPR001193.2E-40621633No hitNo description
PRINTSPR001201.2E-58629654IPR001757P-type ATPase
SuperFamilySSF816652.88E-85647868No hitNo description
PRINTSPR001201.2E-58783804IPR001757P-type ATPase
PROSITE profilePS5098517.9889521355IPR005202Transcription factor GRAS
PfamPF035143.3E-309791377IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006754Biological ProcessATP biosynthetic process
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0000166Molecular Functionnucleotide binding
GO:0016887Molecular FunctionATPase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1378 aa     Download sequence    Send to blast
MGMMVLEAVD HKDVSLEAIN METVDLENIP VEEVFEKLNC SRDGLTLEEV EKRLQLFGHN  60
KLEEKRENKI LKFLSFMWNP LSWVMEAAAI MAIALAHGDD KPTEFHDFVG IILLLIINSS  120
ISFVEENNAG NAAAALMARL APKAKILRDG KWKEEDAGEL VPGDIISIKL GDIIPADARL  180
LEGDPLKIDQ SALTGESLPV TRGPGGVIFS GSTCKQGELE AVVIATGVHT FFGKAAHLVE  240
STNHVGHFQK VLTSIGNFCI CSIALGMVIE IIVIYGIQQR SYRTGIDNLL VLLIGGIPIA  300
MPTVLSVTMA IGSHRLSQQG AITKRMTAIE EMAGMDVLCS DKTGTLTLNK LTVDKNLIEV  360
FANGVQQDDV VLMAARASRL ENQDAIDAAI VAMLADPKEA RAGIKEVHFL PFNPTDKRTA  420
LTYLDGNGKM HRVSKGAPEQ ILNLAKNKTE IANRVHSIID KFAERGLRSL GVARQDVPDN  480
DKESSGSPWE FVGLLPLFDP PRHDSAETIR RALDLGVSVK MITGDQLAIA KETGRRLGMG  540
TNMYPSSSLL GEGRSTGFEA LPVDELIENA DGFAGVFPEH KYEIVKKLQA KKHVVGMTGD  600
GVNDAPALKV ADIGIAVADS TDAARSASDI VLTEPGLSVI ISAVLTSRAI FQRMKNYTIY  660
AVSITIRIVM GFMLLTVFWE FDFPPFMVLI IAILNDGTIM TISKDRVKPS PVPDSWKLSE  720
IFATGVVLGG YLAIMTVVFF WGAYETDFFS DHFHVPSLRK SHYDLSNPDI VSLLNKKLAS  780
AVYLQVSTIS QALIFVTRSR SWSFMERPGF LLVVAFIIAQ LVATVISALA NWGFAGIHSI  840
GWGWTAVIWV YNIITYMLLD PIKFAVRYGL SGRAWGLLYN HRTALTTQKD FGREAREAAW  900
ANEQRTLHGL QTLEAKPIHD KGAFREISMV AEEAKRRAEI ARLRELHTLK GKVESFVKLK  960
GLDIESIMKA AEDQMMSTIH LLKAYGEAME MNQKELVGEL VSRLEEKSSP MGSTLQRVVY  1020
HLVRALHHDK NHQPPDMLML EASRNYELAF KAFYQIFPYG KFAHFTANSV ILESLPPSNS  1080
TIHIVDFDIG SGVQWPPLMD GLVARRVTEM RLTLVRWEND DNFDEEDNDN EEEDNEEVSS  1140
YKPARQRFED TKILLHEHAR MAGLKLIVCE SDMEDLELEI RKENQAIEWL VFNCMVGIPH  1200
MGEGRKAKHV VKFLKVGKEY CMELGSSSST SRGIITFGDG IGWGKGLMCE DLSSSYGSIF  1260
EGQLGQFHAL MESMEGHMPF DCQQLREARI AMECLFMRPY VSSIAGFEMW GDIVRESKEL  1320
VRLGLDALGM KKGLIEEGRE IVKEGESLYW VSNEGVNKNQ LVLGYKDTPL FKVSSWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ksd_A0.0248681832ATPase 2, plasma membrane-type
5ksd_B0.0248681832ATPase 2, plasma membrane-type
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtThe plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport. The resulting external acidification and/or internal alkinization may mediate growth responses (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040166
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631972.10.0plasma membrane ATPase 1-like
SwissprotQ9LY320.0PMA7_ARATH; ATPase 7, plasma membrane-type
TrEMBLA0A2K1XQH40.0A0A2K1XQH4_POPTR; Plasma membrane ATPase
TrEMBLA0A385JIK90.0A0A385JIK9_POPTO; Plasma membrane ATPase
STRINGLus100401660.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50650.12e-13GRAS family protein
Publications ? help Back to Top
  1. Palmgren MG
    PLANT PLASMA MEMBRANE H+-ATPases: Powerhouses for Nutrient Uptake.
    Annu. Rev. Plant Physiol. Plant Mol. Biol., 2001. 52: p. 817-845
    [PMID:11337417]
  2. Axelsen KB,Palmgren MG
    Inventory of the superfamily of P-type ion pumps in Arabidopsis.
    Plant Physiol., 2001. 126(2): p. 696-706
    [PMID:11402198]
  3. Ueno K,Kinoshita T,Inoue S,Emi T,Shimazaki K
    Biochemical characterization of plasma membrane H+-ATPase activation in guard cell protoplasts of Arabidopsis thaliana in response to blue light.
    Plant Cell Physiol., 2005. 46(6): p. 955-63
    [PMID:15821287]
  4. Jakobsen MK, et al.
    Pollen development and fertilization in Arabidopsis is dependent on the MALE GAMETOGENESIS IMPAIRED ANTHERS gene encoding a type V P-type ATPase.
    Genes Dev., 2005. 19(22): p. 2757-69
    [PMID:16291648]
  5. Nelson CJ,Hegeman AD,Harms AC,Sussman MR
    A quantitative analysis of Arabidopsis plasma membrane using trypsin-catalyzed (18)O labeling.
    Mol. Cell Proteomics, 2006. 5(8): p. 1382-95
    [PMID:16635983]
  6. Niittylä T,Fuglsang AT,Palmgren MG,Frommer WB,Schulze WX
    Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis.
    Mol. Cell Proteomics, 2007. 6(10): p. 1711-26
    [PMID:17586839]
  7. Santi S,Schmidt W
    Dissecting iron deficiency-induced proton extrusion in Arabidopsis roots.
    New Phytol., 2009. 183(4): p. 1072-84
    [PMID:19549134]
  8. Doustaly F, et al.
    Uranium perturbs signaling and iron uptake response in Arabidopsis thaliana roots.
    Metallomics, 2014. 6(4): p. 809-21
    [PMID:24549117]
  9. Yuan W, et al.
    Arabidopsis plasma membrane H+-ATPase genes AHA2 and AHA7 have distinct and overlapping roles in the modulation of root tip H+ efflux in response to low-phosphorus stress.
    J. Exp. Bot., 2017. 68(7): p. 1731-1741
    [PMID:28369625]