PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10040141

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 384aa MW: 43123.4 Da PI: 8.064

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10040141	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.7	1.5e-18	18	104	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +Wt++e+ +Li+a+r+++ +++rg+l++++W++v++++ + +s++qC++k+e+++kry+++k++ + + s++ +f Lus10040141 18 CWTREETVELIKAYRDKWFAVNRGNLRAADWDSVAAVLadspAPSDPPKSAVQCRHKIEKIRKRYRAEKQRCVNFPGRFFSSWDLFP 104 8***********************************66555555689******************987666555556666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.3E-18	17	109	No hit	No description
PROSITE profile	PS50090	6.121	19	79	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MSSAVAADSS SRKVPPPCWT REETVELIKA YRDKWFAVNR GNLRAADWDS VAAVLADSPA 60 PSDPPKSAVQ CRHKIEKIRK RYRAEKQRCV NFPGRFFSSW DLFPLLDSME IGSIGSKQEK 120 DVDKSNNNNN NDHYEGLEEP DLDLDPDLVF RARKFGKVSG GFNERVVDYG NKYDQNSVSV 180 AFMPNDYGRF DRKIGGNNSN LGFDSDYGSG GFSRKMGQLQ RDDMMNGVNE ERDRFGKKVV 240 EEWGYGSSRI RVKNHIQADR NGFGSGNTNG VDGGGVSSKG KDPVAEVVSA IKMLREGFVM 300 VEEMKMDMAM EIEKMRMGME LKHNQMLIEM QQDIVDAFAK AHVKKKTNNI NKKKRKMDVS 360 SSPNLHRNNG ESEIAATEFE TID*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MSSAVAADSS SRKVPPPCWT REETVELIKA YRDKWFAVNR GNLRAADWDS VAAVLADSPA  60
PSDPPKSAVQ CRHKIEKIRK RYRAEKQRCV NFPGRFFSSW DLFPLLDSME IGSIGSKQEK  120
DVDKSNNNNN NDHYEGLEEP DLDLDPDLVF RARKFGKVSG GFNERVVDYG NKYDQNSVSV  180
AFMPNDYGRF DRKIGGNNSN LGFDSDYGSG GFSRKMGQLQ RDDMMNGVNE ERDRFGKKVV  240
EEWGYGSSRI RVKNHIQADR NGFGSGNTNG VDGGGVSSKG KDPVAEVVSA IKMLREGFVM  300
VEEMKMDMAM EIEKMRMGME LKHNQMLIEM QQDIVDAFAK AHVKKKTNNI NKKKRKMDVS  360
SSPNLHRNNG ESEIAATEFE TID*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10040141

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021605142.1	1e-99	uncharacterized protein LOC110609684
TrEMBL	A0A2C9WCE6	3e-98	A0A2C9WCE6_MANES; Uncharacterized protein
STRING	Lus10040141	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13797	14	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	8e-29	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10040141