PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10040109
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 548aa    MW: 60638.1 Da    PI: 5.8018
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10040109genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.23.1e-27306360156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k++++Wt++LH++Fv+aveqL G ++A+P++ilelmkv+gLt+++++SHLQkYR++
  Lus10040109 306 KTKVDWTSDLHRKFVKAVEQL-GVDHAIPSKILELMKVEGLTRHNIASHLQKYRMH 360
                  6799*****************.9*******************************96 PP
2Response_reg33.32.6e-12201261109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+ d++ + +  +++ le  +y  v ++ + e+al  + +k   ++  ++ +  ++ +G+  +k +++++ +lpii++++ +  +++ +++++Ga+
   Lus10040109  20 VLLLDEDINSAAEIKSKLEAMDY-TVSTFCNEEKALSAFSDKPesFHAAVVEVTVSDGNGS--FKFLENAK-DLPIIMISDVNCLSMMMKCISLGAM 112
                   78889999999999*********.***************7777669999999998887775..78887777.9************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   +fl Kp ++++l++
   Lus10040109 113 EFLHKPLSEDKLRN 126
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.42E-1516135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.0E-1617148No hitNo description
SMARTSM004480.002918128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.10719132IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.1E-920126IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.52E-1021131No hitNo description
PROSITE profilePS5129415.339303362IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-26304363IPR009057Homeodomain-like
SuperFamilySSF466895.2E-18304363IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-25306360IPR006447Myb domain, plants
PfamPF002494.0E-7309358IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MVCTANDLSE WKDFPKGLSV LLLDEDINSA AEIKSKLEAM DYTVSTFCNE EKALSAFSDK  60
PESFHAAVVE VTVSDGNGSF KFLENAKDLP IIMISDVNCL SMMMKCISLG AMEFLHKPLS  120
EDKLRNLWQH VVHKAFNAGS SVQSEPMKRV KDSVASMSEI KKEIEVMDNG NSDEMEEVSP  180
ADENSGQSSD SDKYPAPSTP QLKQGQRLLD DVDCQDHTHC STEKESAVQE GESKSVETSF  240
TMAEISVQVD TGNLTDSKIK EDDDLTSGAN IDPQNIQNKS NGGAEDGAKA SSCHNTSGVT  300
KANRKKTKVD WTSDLHRKFV KAVEQLGVDH AIPSKILELM KVEGLTRHNI ASHLQKYRMH  360
RRHIIPTEDE RRWPHQHKDG TKRRYYLQKP IIAYPPPYHQ QHSTHATFPP NYVHPMWGAA  420
TGNHPPPGVH LWGPPGYSPW PSFPAALHAD AWGCPVMPQP QFPYPCLPQN QPGYHGVALA  480
DNHCTMSQNP YDFQPAEEVI DKVVKEAINE PWLPLPIGLK PPSIDSVVAE LCRQGISTVP  540
PHIDGST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-16304364363ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10040109
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006368445.20.0two-component response regulator-like APRR2 isoform X1
RefseqXP_021595906.10.0two-component response regulator-like APRR2
RefseqXP_021595907.10.0two-component response regulator-like APRR2
RefseqXP_024440369.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440375.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440380.10.0two-component response regulator-like APRR2 isoform X1
RefseqXP_024440382.10.0two-component response regulator-like APRR2 isoform X1
TrEMBLA0A251J7670.0A0A251J767_MANES; Uncharacterized protein
TrEMBLA0A251J7I20.0A0A251J7I2_MANES; Uncharacterized protein
TrEMBLA0A2K2BXM60.0A0A2K2BXM6_POPTR; ARR-B family protein
STRINGLus100401090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-124ARR-B family protein