PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039883
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 458aa    MW: 49770.9 Da    PI: 6.9916
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039883genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.1e-28177231156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k +++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++v+SHLQkYR++
  Lus10039883 177 KMKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIHCLTRHNVASHLQKYRSH 231
                  5689*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.981174233IPR017930Myb domain
SuperFamilySSF466891.34E-18175234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-27175234IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-26177231IPR006447Myb domain, plants
PfamPF002495.0E-8180229IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MLAVSVAAPL GVDESSFQQG KMMEEVNNFS DGFFCDGNLL LMESIDFDDL FVGMDDGDVL  60
PDLEMDSEIL TDFSQESEVI IHDGATTTAT GFETVGNEGE DVVIIIEDGK DSNKDGMGTG  120
KEEVGQAASP SSSASMVMNP PGSDGVRSGG EKRKKSSTAS SHQSNIGGKN NNQGKRKMKV  180
DWTPELHRRF VQAVEQLGVD KAVPSRILEL MGIHCLTRHN VASHLQKYRS HRKHILAREA  240
EAASWSHRRQ MYGIAGVTSH SNSVDVNHQN HHRRPWKHAP ATVGFPPMHH HLVRPLHVWG  300
HPHQHQPLWH HNRRVGATGE GVTPSPGIAS FPQAAAPAAV RPRRLNYDHH QRVLSLSHSQ  360
KFTTPPILSI IPPPHAMYKP GHGVSPPATS ASSPNQPFDF QPSNESIDAA IGDVLSKPWL  420
PLPLGLKPPA VDTVLVELHC QGISNVPPRP STTSFGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-15174235263ARR10-B
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152178RKKSSTASSHQSNIGGKNNNQGKRKMK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100398830.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42423461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.11e-68GBF's pro-rich region-interacting factor 1