PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10039857 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 217aa MW: 23448.3 Da PI: 9.8705 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.7e-20 | 21 | 70 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+taeeAa+a+++a++ ++g Lus10039857 21 HYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDKAARDFRG 70 69*******.**********8...557**********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.38E-30 | 21 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 21 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.4E-37 | 21 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-14 | 21 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.393 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-22 | 21 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.8E-12 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-12 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAPQAAKETK ATKSSSEVEM HYRGVRKRPW GRYAAEIRDP GKKTRVWLGT FDTAEEAARA 60 YDKAARDFRG NKAKTNFTLP DEIFTFKVAV DGNKQQQLPP PQLSPSYSSN VESSSPPSAA 120 RGFPSASRFP FVNQKENGGA VWLFDGILRP DLAAAARQQF SLQLGGEFKS GFGLGTGSQS 180 SESDSSSVVD CKQPPPPAAK PMELNLDLNL APPMSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-21 | 21 | 79 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 6e-21 | 21 | 79 | 5 | 64 | ATERF1 |
3gcc_A | 6e-21 | 21 | 79 | 5 | 64 | ATERF1 |
5wx9_A | 3e-20 | 22 | 77 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00542 | DAP | Transfer from AT5G44210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10039857 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021681223.1 | 3e-48 | ethylene-responsive transcription factor 9-like | ||||
TrEMBL | S4TAK8 | 7e-47 | S4TAK8_HEVBR; AP2/ERF super family protein | ||||
STRING | Lus10039857 | 1e-158 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 1e-28 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Lus10039857 |