PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10039846 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | SBP | ||||||||
Protein Properties | Length: 204aa MW: 23007.6 Da PI: 8.4935 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.7 | 1e-40 | 79 | 155 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq+e+C++dl+ ak yhrrh+vCe hska+vvlvsgl+qrfCqqCsrfhel efD+ krsCrrrLa+hnerrrk++ Lus10039846 79 CCQAEKCTNDLTVAKAYHRRHRVCEYHSKAQVVLVSGLRQRFCQQCSRFHELPEFDDMKRSCRRRLAGHNERRRKNA 155 6**************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.4E-31 | 76 | 141 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.342 | 77 | 154 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.06E-36 | 79 | 155 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.5E-31 | 80 | 153 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEEGGEGKQK KMMVVKKESG DDSDSTDEYG QQHQGMGYFF DDDDDDSSES CKKKKLVIGN 60 SITASFAGGE RRVSGGGRCC QAEKCTNDLT VAKAYHRRHR VCEYHSKAQV VLVSGLRQRF 120 CQQCSRFHEL PEFDDMKRSC RRRLAGHNER RRKNAAADSH PHNHPHEGSS AMKEDTICGQ 180 VDPRGRIKIV TAENPSYKHF QIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 6e-35 | 74 | 153 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10039846 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021681200.1 | 8e-66 | squamosa promoter-binding protein 1-like isoform X1 | ||||
Swissprot | Q38741 | 4e-38 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A2C9US05 | 3e-58 | A0A2C9US05_MANES; Uncharacterized protein | ||||
TrEMBL | A0A2P5DNH3 | 2e-58 | A0A2P5DNH3_TREOI; SBP-box transcription factor | ||||
TrEMBL | B9RVW3 | 3e-58 | B9RVW3_RICCO; Squamosa promoter-binding protein, putative | ||||
STRING | Lus10039846 | 1e-150 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 4e-39 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Lus10039846 |
Publications ? help Back to Top | |||
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