PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039809
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 385aa    MW: 42588 Da    PI: 6.052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039809genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-19181231256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Lus10039809 181 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 231
                  59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.22E-34180240No hitNo description
Gene3DG3DSA:3.30.730.102.3E-32181239IPR001471AP2/ERF domain
PROSITE profilePS5103222.972181238IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23181239IPR016177DNA-binding domain
SMARTSM003806.2E-41181244IPR001471AP2/ERF domain
PRINTSPR003676.1E-11182193IPR001471AP2/ERF domain
PfamPF008473.1E-12182231IPR001471AP2/ERF domain
PRINTSPR003676.1E-11204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAAARNNTGK SKKIEFRNMT DSSSSSMTER ELRPLKKIRS PDRLDLSQQL AFLQQQQQFQ  60
HSFPNPPSSS SSSFSNSHVF TSKFPFAVDG GCSSSTNWPV NFPLPPAQNQ NQMISFGQSQ  120
NQNQSFMAAN SFHHQQQLFR YWNDTLNLSP RGQLIVGPDG RRFFQPSPTA MPIQPINTTK  180
LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEDAAMA YDREAFKLRG ENARLNFPEL  240
FLNKGNPPAE SESSPCSPQV VTVQPPPNAD TLPPPAAEAQ AEAETEQDSN SESAASVAAD  300
GGQMGWGEMA DAWLNAIQEG WGPGSAVWDD LDANNNLFLN SQIPFQSSNQ QQGEGIISAT  360
SSSSSSLPSS SCFQTKPFFW KDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21180238160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039809
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012088313.12e-94ethylene-responsive transcription factor ERF054
SwissprotQ9SKT12e-54ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A1L6CB331e-96A0A1L6CB33_VERFO; AP2/ERF domain-containing transcription factor
STRINGLus100398090.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-52ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]