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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Lus10039639 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family |
bHLH |
Protein Properties |
Length: 338aa MW: 38163 Da PI: 7.8945 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Lus10039639 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 40.8 | 4.1e-13 | 165 | 211 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k+Lq
Lus10039639 165 DHIMAERKRREKLSQRFIALSSIVPGL-----KKMDKASVLGDAIKYVKHLQ 211
699************************.....9******************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MEDYKFFQHC DTINSEFEQN TVAAAALLPG EALQPSFSSE SYSSYSAGFH RQSTAPNTLT 60 PPPAAISRSS INETSQTKTF DDHRPKRQQR KTNSWTSSVT TEHQQHIDFS SNPNPQMFFR 120 QLQIHHFLSS AFLQERLRAN KPLPTLKITS WLSSSLTRTP YHAQDHIMAE RKRREKLSQR 180 FIALSSIVPG LKKMDKASVL GDAIKYVKHL QEKIKQLEEQ TKKRTVESVV LVKRCQLPMD 240 EDSNSSSCED DNNNSSKGEK KGCWDSTLPE IEAKASERDV MIRIHCEKQP GVVAKLLYEV 300 ESLNLSILNS SVLPFGNTTV DITVIAQLCI VAYEEKD*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 7e-13 | 165 | 220 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 7e-13 | 165 | 220 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 7e-13 | 165 | 220 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 7e-13 | 165 | 220 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 7e-13 | 165 | 220 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 7e-13 | 165 | 220 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 7e-13 | 165 | 220 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 7e-13 | 165 | 220 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 169 | 174 | ERKRRE |
2 | 170 | 175 | RKRREK |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |