PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039631
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 273aa    MW: 30575.5 Da    PI: 4.6638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039631genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12131174654
                  HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Lus10039631 131 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 174
                  589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-15128191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-12131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9131174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-4132178No hitNo description
Gene3DG3DSA:4.10.280.107.5E-16132190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MATTTTTIIP PPPLPYLPFD FTDQLHASSS YPLFGDGTGF HIDQNSSPPL LQQEDPNNYQ  60
PNMVVEEEEG NNEEMVMSCC KSEEELGAEQ SEQLVHHLEA SSMANQGFCG EIKKSNNNKS  120
KRIEGQPSKN LMAERRRRKR LNDRLSMLRS IVPKISKMDR TSILGDTIDY VKELLEKINR  180
LQEEDEGGEN DQVKLIANLN DHKPTELLVR NSPKFSVERR EMDTRVDICC APKPGLLLST  240
VNTIEALGLE IQQCVISCFN DFSLQASCSQ AC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133140ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039631
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528891.34e-84transcription factor bHLH93
RefseqXP_008236674.13e-84PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL14e-73BH093_ARATH; Transcription factor bHLH93
TrEMBLB9SSC28e-83B9SSC2_RICCO; DNA binding protein, putative
STRINGLus100396310.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118634103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-71beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]