PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039562
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 477aa    MW: 53630.3 Da    PI: 6.1256
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039562genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.21.3e-137484731374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL +cA+ v++g+ e+a+  L ++s+lasp+gd+mqR+aayfteALa r+++ +++ly+al++++t+  + see+ ++klf+e++P+lk+s++++
  Lus10039562  48 LIQLLHACANQVAAGSVENANIGLGHISHLASPEGDTMQRIAAYFTEALADRMLKIWPGLYNALNSTKTR--SASEEILVQKLFFELCPFLKLSYVIT 143
                  689*************************************************************999998..599*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI+ea+ege+++HiiD+++s+++QW+ Ll++L++Rpegpp+lRiTg+++    +ke l ++g rL + Ae+l++pf+fn  ++++le+l+le+Lrv
  Lus10039562 144 NQAIVEAMEGEKMIHIIDLNASEPAQWIELLRTLSARPEGPPHLRITGIHE----QKEVLDQMGVRLVEEAEKLDIPFQFNS-IVSTLETLDLERLRV 236
                  ***************************************************....9**************************.79************* PP

         GRAS 197 kpgEalaVnlvlqlhrll...........................................................desvsles..erdevLklvks 233
                  k+gEalaV++vlqlh+ l                                                               sl+   +  ++L+ +++
  Lus10039562 237 KTGEALAVSSVLQLHNYLatdeevvtrgfpsasksashnnhiqklmqmkqnqktlgewlendmvqyhssspdsalspL---SLAPspNMGTFLSSLWG 331
                  ***********************************************************************9996642...3322335788******* PP

         GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                  lsPk++vv+eqe+dhn+ s+ +r++ea+++y+alfd+l +++ pr+s er+kvE++llg+ei+n++aceg er+erhe+lekW +rle aGF+ vpls
  Lus10039562 332 LSPKIMVVTEQESDHNGDSLTDRVSEAMNFYAALFDCLeSSTDPRASVERQKVEKMLLGKEIKNIIACEGIERKERHEKLEKWIMRLELAGFGRVPLS 429
                  **************************************666779999*************************************************** PP

         GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++ + qa++ll+ ++  gy++++++g+l+++W+drpL+s+SaWr
  Lus10039562 430 YDGMWQANRLLQSYNYGGYKIKDKNGCLLICWHDRPLYSISAWR 473
                  *******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.73722453IPR005202Transcription factor GRAS
PfamPF035144.5E-13548473IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MAGNLQEDRS SVTSSPHQLF SWMSLSPGLG SPFPWLRDLQ PEERGLCLIQ LLHACANQVA  60
AGSVENANIG LGHISHLASP EGDTMQRIAA YFTEALADRM LKIWPGLYNA LNSTKTRSAS  120
EEILVQKLFF ELCPFLKLSY VITNQAIVEA MEGEKMIHII DLNASEPAQW IELLRTLSAR  180
PEGPPHLRIT GIHEQKEVLD QMGVRLVEEA EKLDIPFQFN SIVSTLETLD LERLRVKTGE  240
ALAVSSVLQL HNYLATDEEV VTRGFPSASK SASHNNHIQK LMQMKQNQKT LGEWLENDMV  300
QYHSSSPDSA LSPLSLAPSP NMGTFLSSLW GLSPKIMVVT EQESDHNGDS LTDRVSEAMN  360
FYAALFDCLE SSTDPRASVE RQKVEKMLLG KEIKNIIACE GIERKERHEK LEKWIMRLEL  420
AGFGRVPLSY DGMWQANRLL QSYNYGGYKI KDKNGCLLIC WHDRPLYSIS AWRHRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-384247513381Protein SCARECROW
5b3h_A1e-384247512380Protein SCARECROW
5b3h_D1e-384247512380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039562
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021682816.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A067KWA80.0A0A067KWA8_JATCU; GRAS23 protein
STRINGLus100395620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]