PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039265
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 682aa    MW: 74147.7 Da    PI: 6.11
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039265genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.63.3e-983016812374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  +++Lle+A ++ +g+ e a ++L+rl + ++ +g++ qRl  y+  AL++r++        a +p + ++   +e+  +++l++e+sP++k+++++aN
  Lus10039265 301 RQVLLEAASVIYDGKPESAAEILSRLTK-SNGKGNSEQRLMDYLFSALKSRVNP-------AENPPPVADLYGKEHSESTQLLFELSPCFKLGFMAAN 390
                  689***********************86.6789********************9.......3344444445699999********************* PP

         GRAS 100 qaIleavege........erv.HiiDfdisqGlQWpaLlqaLasRpeg.......ppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnv 180
                   aIlea+ +e        ++v H++Dfd+++G Q+++Ll aL+++ +g       +  ++iT+ +  + + +ke+l+++ge L+++Ae++gv+++f+v
  Lus10039265 391 LAILEAALEEgnsnnnnkKTVfHVVDFDLGKGRQYMNLLYALSEKVNGknpatagAVLVKITAAALDSVEeEKERLNTVGETLRQVAERVGVTLQFKV 488
                  ******9666567777765557**********************99444444444779*****99977668**************************9 PP

         GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                   v+ +l+dl+ e+L ++p+E laVn++++l+r++desvs++++rde+L+ vk ++P++v+ veqe+  n+++Fl+r+ ea++yysalf+s++ ++p  
  Lus10039265 489 -VSCNLTDLTRESLGCEPDEPLAVNFAFKLYRMPDESVSTDNPRDELLRRVKAMEPRIVTTVEQEMHANTAPFLTRVNEACRYYSALFESIDLTVP-G 584
                  .7999*****************************************************************************************85.6 PP

         GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + er kvE+  lgr++ n +aceg++r+er+e  +kWr+r++ aGFk  plsek+++++k+ l+  +  + g++v+ee+g +++gW++++L+++SaWr
  Lus10039265 585 EPEREKVEQG-LGRKLANTIACEGRDRVERCEVSGKWRARMGLAGFKREPLSEKVTESMKARLESGNraNPGFTVQEENGGACFGWMGKALTVASAWR 681
                  799*******.****************************************************98776789**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.258274659IPR005202Transcription factor GRAS
PfamPF035141.1E-95301681IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MASGFPGGGG FSGSGGGGSD SYFAGRSMNS SSFNPNNTTQ LPYRAQQQLP QIFLDQSSQI  60
GHQRNHHHHH LLQQQQQQQS PASSCMGKRA LSDFQGINPG LNSLLLRSVK PRIYQNNCSD  120
FSGNLAINNN NFSAENSFSA LSSQRYGLPL LQQLRPQPIN VLPQQTLQGV PFAQTRTQNN  180
KPVSVSVGSG GPGQDSEKKM MNRLQELEKQ LLDDDEEAEG EEGQSDAVSV ITNANSEWSE  240
TIQNLITPSS SPNEKNSNNV GQNQISPSPS PSSSSSTTSS STTTAATAKP PPSSSLAICS  300
RQVLLEAASV IYDGKPESAA EILSRLTKSN GKGNSEQRLM DYLFSALKSR VNPAENPPPV  360
ADLYGKEHSE STQLLFELSP CFKLGFMAAN LAILEAALEE GNSNNNNKKT VFHVVDFDLG  420
KGRQYMNLLY ALSEKVNGKN PATAGAVLVK ITAAALDSVE EEKERLNTVG ETLRQVAERV  480
GVTLQFKVVS CNLTDLTRES LGCEPDEPLA VNFAFKLYRM PDESVSTDNP RDELLRRVKA  540
MEPRIVTTVE QEMHANTAPF LTRVNEACRY YSALFESIDL TVPGEPEREK VEQGLGRKLA  600
NTIACEGRDR VERCEVSGKW RARMGLAGFK REPLSEKVTE SMKARLESGN RANPGFTVQE  660
ENGGACFGWM GKALTVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3331868122375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039265
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090206.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-169SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A172MLD40.0A0A172MLD4_LINUS; Putative GRAS domain family protein
STRINGLus100392650.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-144SCARECROW-like 8