PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10039265 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 682aa MW: 74147.7 Da PI: 6.11 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 320.6 | 3.3e-98 | 301 | 681 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +++Lle+A ++ +g+ e a ++L+rl + ++ +g++ qRl y+ AL++r++ a +p + ++ +e+ +++l++e+sP++k+++++aN Lus10039265 301 RQVLLEAASVIYDGKPESAAEILSRLTK-SNGKGNSEQRLMDYLFSALKSRVNP-------AENPPPVADLYGKEHSESTQLLFELSPCFKLGFMAAN 390 689***********************86.6789********************9.......3344444445699999********************* PP GRAS 100 qaIleavege........erv.HiiDfdisqGlQWpaLlqaLasRpeg.......ppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnv 180 aIlea+ +e ++v H++Dfd+++G Q+++Ll aL+++ +g + ++iT+ + + + +ke+l+++ge L+++Ae++gv+++f+v Lus10039265 391 LAILEAALEEgnsnnnnkKTVfHVVDFDLGKGRQYMNLLYALSEKVNGknpatagAVLVKITAAALDSVEeEKERLNTVGETLRQVAERVGVTLQFKV 488 ******9666567777765557**********************99444444444779*****99977668**************************9 PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 v+ +l+dl+ e+L ++p+E laVn++++l+r++desvs++++rde+L+ vk ++P++v+ veqe+ n+++Fl+r+ ea++yysalf+s++ ++p Lus10039265 489 -VSCNLTDLTRESLGCEPDEPLAVNFAFKLYRMPDESVSTDNPRDELLRRVKAMEPRIVTTVEQEMHANTAPFLTRVNEACRYYSALFESIDLTVP-G 584 .7999*****************************************************************************************85.6 PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + er kvE+ lgr++ n +aceg++r+er+e +kWr+r++ aGFk plsek+++++k+ l+ + + g++v+ee+g +++gW++++L+++SaWr Lus10039265 585 EPEREKVEQG-LGRKLANTIACEGRDRVERCEVSGKWRARMGLAGFKREPLSEKVTESMKARLESGNraNPGFTVQEENGGACFGWMGKALTVASAWR 681 799*******.****************************************************98776789**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.258 | 274 | 659 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-95 | 301 | 681 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MASGFPGGGG FSGSGGGGSD SYFAGRSMNS SSFNPNNTTQ LPYRAQQQLP QIFLDQSSQI 60 GHQRNHHHHH LLQQQQQQQS PASSCMGKRA LSDFQGINPG LNSLLLRSVK PRIYQNNCSD 120 FSGNLAINNN NFSAENSFSA LSSQRYGLPL LQQLRPQPIN VLPQQTLQGV PFAQTRTQNN 180 KPVSVSVGSG GPGQDSEKKM MNRLQELEKQ LLDDDEEAEG EEGQSDAVSV ITNANSEWSE 240 TIQNLITPSS SPNEKNSNNV GQNQISPSPS PSSSSSTTSS STTTAATAKP PPSSSLAICS 300 RQVLLEAASV IYDGKPESAA EILSRLTKSN GKGNSEQRLM DYLFSALKSR VNPAENPPPV 360 ADLYGKEHSE STQLLFELSP CFKLGFMAAN LAILEAALEE GNSNNNNKKT VFHVVDFDLG 420 KGRQYMNLLY ALSEKVNGKN PATAGAVLVK ITAAALDSVE EEKERLNTVG ETLRQVAERV 480 GVTLQFKVVS CNLTDLTRES LGCEPDEPLA VNFAFKLYRM PDESVSTDNP RDELLRRVKA 540 MEPRIVTTVE QEMHANTAPF LTRVNEACRY YSALFESIDL TVPGEPEREK VEQGLGRKLA 600 NTIACEGRDR VERCEVSGKW RARMGLAGFK REPLSEKVTE SMKARLESGN RANPGFTVQE 660 ENGGACFGWM GKALTVASAW R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 5e-33 | 318 | 681 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10039265 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090206.1 | 0.0 | scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 1e-169 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A172MLD4 | 0.0 | A0A172MLD4_LINUS; Putative GRAS domain family protein | ||||
STRING | Lus10039265 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6266 | 31 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-144 | SCARECROW-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Lus10039265 |