PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10039214 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 31848.7 Da PI: 6.5117 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.9e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l d++++ G g+W+t ++ g+ R++k+c++rw +yl Lus10039214 14 RGAWSAEEDEILSDYINKNGHGSWRTLPQNAGLLRCGKSCRLRWTNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.7 | 8.8e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+ +v + + lG++ W++Ia+ ++ gRt++++k++w+++l Lus10039214 67 RGSFSPEEESTIVGLQATLGNK-WASIASQLP-GRTDNEIKNHWNTHL 112 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.115 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.86E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.73 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.36E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRSPCCDRN GVKRGAWSAE EDEILSDYIN KNGHGSWRTL PQNAGLLRCG KSCRLRWTNY 60 LRPDIKRGSF SPEEESTIVG LQATLGNKWA SIASQLPGRT DNEIKNHWNT HLKKRFPAPL 120 PKKAAPNKVE AWQASMDESS SMLLTNTPPL PPPPPSSPVS QNFAKDHYLK LWYSDVGESF 180 RNIRVECESS NSQVSSFSKL GSGSVDDTLT TMMATPTTAT TNLVDATNMM VGPNPGLDGM 240 VSSSGSINSN EFTSYSDTAL KQLLAMPGGN SVMEFLENDD VFTNFPFRCD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10039214 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX174447 | 0.0 | JX174447.1 Linum usitatissimum clone LuBAC375N24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021671666.1 | 1e-93 | transcription factor MYB41-like | ||||
TrEMBL | I6Y9M1 | 0.0 | I6Y9M1_LINUS; Myb-like DNA-binding domain protein | ||||
STRING | Lus10039214 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2331 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61250.1 | 4e-64 | myb domain protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Lus10039214 |