PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039171
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 320aa    MW: 35402.4 Da    PI: 8.9648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039171genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.2e-191868155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+y GVr+++ +g+WvAeI+d +   ++ r +lg+f+tae+Aa+a+++a++ l+g
  Lus10039171 18 SKYVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFDTAEDAARAYDEAARLLRG 68
                 89********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-131868IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-201877IPR016177DNA-binding domain
CDDcd000182.48E-321875No hitNo description
Gene3DG3DSA:3.30.730.104.2E-291976IPR001471AP2/ERF domain
PROSITE profilePS5103220.1781976IPR001471AP2/ERF domain
SMARTSM003801.7E-371982IPR001471AP2/ERF domain
PRINTSPR003672.6E-82031IPR001471AP2/ERF domain
PRINTSPR003672.6E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MATKLKVVGR KNTMSTKSKY VGVRQRPSGK WVAEIKDTTQ KIRMWLGTFD TAEDAARAYD  60
EAARLLRGSN TRTNFNLATN HNHNHCQSNV LFPNSQISTK IRNLLHRRRA NINKPNSIAI  120
PVPPSICLPT KTQFLNFQTH NTIGTSSSFS TSNTIGTSNS TYSTSNTIST STSISNSPSS  180
PSSPAFSVPQ ERNFEVFGDA YKPDVQSISN PPIQFLPSGF FFQGEELSSM QHQQQEVDVR  240
LVSSSCGEEH DDQLPKFERM KVERQISASI YAMNGLNECI MQQQYHHPTG FGGGGDHHGS  300
NLWDFPALCS VLSDSFSFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-162080667ATERF1
3gcc_A6e-162080667ATERF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039171
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100391710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-27related to AP2 11