PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10039123 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 244aa MW: 26936.3 Da PI: 6.713 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.3 | 7.1e-33 | 39 | 93 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av+qLGG++kAtPk il++m+vkgLtl h+kSHLQkYR+ Lus10039123 39 KPRLRWTADLHDRFVDAVTQLGGPNKATPKGILRTMNVKGLTLFHLKSHLQKYRM 93 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.634 | 36 | 96 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-31 | 36 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-24 | 39 | 94 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.33E-16 | 39 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-7 | 41 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.4E-12 | 135 | 179 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MFQDYEMQNP VYGRRLGYGG AVVGGGEYPG EVVLTSDPKP RLRWTADLHD RFVDAVTQLG 60 GPNKATPKGI LRTMNVKGLT LFHLKSHLQK YRMGKQLVGK DHMGGDSTKD DDGLVELPQA 120 SPDTTVSDDV NEGYQVKEAL RAQMEVQSKL YLQVVAEKHL RIRQEAECRY LAMLDQACKL 180 LANQFITESM SLNTNTNFSS VSHPATIGGS IQHQGTDCST ESCLTSSHGT ESARISCWRE 240 DRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-20 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-20 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-20 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-20 | 39 | 95 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10039123 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082211.1 | 4e-78 | protein PHR1-LIKE 3 isoform X1 | ||||
TrEMBL | A0A067K9Q2 | 9e-77 | A0A067K9Q2_JATCU; Uncharacterized protein | ||||
STRING | Lus10039123 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13640.1 | 8e-52 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10039123 |