PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10039080
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 487aa    MW: 54537.7 Da    PI: 6.3092
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10039080genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.33.6e-22301386186
     trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++ ev+aLi++r++ e+++r  g      W+e+s++m++ g++r+ k C++kwen+n ++k+   + +k++++ss + pyf++le
  Lus10039080 301 KWPEAEVQALIKIRTSFEQKFRVmGYTSSYVWDEISARMQKMGYHRTGKNCRSKWENMNSYFKRSLGTGEKKRCDSS-RLPYFNELE 386
                  7*********************7478999***********************************9888887777776.9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.457294359IPR017877Myb-like domain
SMARTSM007170.0048298361IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-5299358IPR009057Homeodomain-like
SuperFamilySSF466898.02E-5299361IPR009057Homeodomain-like
PfamPF138373.7E-18300388No hitNo description
CDDcd122031.70E-20300365No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MELLIGDRRI KNREAFPQPF PPFTAAADDN IVPSTLPVPP DDDFAAFRGF PPQKLRPIRG  60
NPRSPSQVRN DNQLGHRHSN AMELDGTFDK LGVLVNEVCA DAGGYFGLPP DAADFVGLGR  120
SVAGGVKGQC LTRDCSPGDG SGSGRQKLNA DGDDSSSSTG DDDSSASTKK GAGSKRKRKT  180
REKLEEYVER LTMKVMEKQE RLHTELMATL ERKEKERIMR EEAWKRQEIE RMEREEAARA  240
QEISHNIAFI SFIKKAIGNN NGGEEIPQAA AISPVVDDQP KEGYSSPPVE RKDSCDASSK  300
KWPEAEVQAL IKIRTSFEQK FRVMGYTSSY VWDEISARMQ KMGYHRTGKN CRSKWENMNS  360
YFKRSLGTGE KKRCDSSRLP YFNELERLYK DEVFSSSITP NQRTGKDSES GVKRQCYDSS  420
STEQKLDAAE DADGSVCSCS RLSAVLPDKE GKDECVEKSG ERDDGKEESQ YYRRLWSHVV  480
WEYPEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10039080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100390800.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-27Trihelix family protein