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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 336aa MW: 35794.9 Da PI: 7.0049 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.5 | 2e-30 | 122 | 175 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Lus10038996 122 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 175 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.4E-20 | 119 | 179 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 119 | 178 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 121 | 180 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-24 | 123 | 175 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 125 | 174 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MRDDESNWFA RWDEELPSPD ELMPITQTLI TPDLALAFDI RTTPTTATTA AAVNNSLHHN 60 QPLPTPPPPP PPPLPSLPAG SLPSPNTNNP NSLANSSEFA PDSSAELGSG TGGDEPARTL 120 KRPRLVWTPQ LHKRFVDAVA HLGIKNAVPK TIMQLMSVDG LTRENVASHL QKYRLYLKRM 180 QGLSSSAANG GGSSSSTSGV DAATDHLFAS SPVPAHFLHP AAVAAAGRPP NSDHFLPFDP 240 ISALQHHHHH QQMAAAVGGH PGQYHHRQMG HFGSPPTNGQ FDHHPFLARQ QAVHRMGPPV 300 RNAVPAGYNV EDLESATNGN GGGRKVLTLF PTADD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-32 | 122 | 178 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10038996 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019162796.1 | 1e-120 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 4e-63 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A2P2JJL7 | 1e-119 | A0A2P2JJL7_RHIMU; Uncharacterized protein | ||||
STRING | Lus10038996 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 4e-74 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10038996 |
Publications ? help Back to Top | |||
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