PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038779
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family Trihelix
Protein Properties Length: 424aa    MW: 47855.5 Da    PI: 7.988
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038779genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.51.5e-22305390186
     trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++ ev+aLi++r++ e+++r  g      W+e+s++m++ g++r+ k C++kwen+n ++k+   + +k+  ++ss++pyf++le
  Lus10038779 305 KWPEAEVQALIKIRTSFEQKFRVmGYTSSYVWDEISARMQKMGYHRTGKNCRSKWENMNSYFKRSLGTGEKK-RRDSSRMPYFNELE 390
                  7*********************7478999**********************************987776665.678889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0048302365IPR001005SANT/Myb domain
PfamPF138371.3E-18304392No hitNo description
SuperFamilySSF466897.84E-5304365IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-5304362IPR009057Homeodomain-like
CDDcd122031.30E-20304369No hitNo description
PROSITE profilePS500907.445305363IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MELLIGDRRI KNPETFPQSF PPFTAAAADN LAPSTLPVPP DDDFTAFRGF PPHKLRPIRR  60
NPRSPSQVRN DNQLGHCHSS AMELDGTFDK LGVLVNEVCA DAGGYFGLAP DEADCVNIGR  120
SVAGGAKGQC LTRDCSPGDD SGSGRQKLNV EANRDGDESS SSTNDDDSSA STEKVAGSKR  180
KRKAREKLEE YVERLTMKVM EKQERLHREL MVILERKEKE RIMREEAWKR QEIERMEREE  240
AARAQEISHN IAFISFIKKA IGNSNGGEEI PQAAATSPVV DDQAKEGYSS PPFERKDSCD  300
PSSKKWPEAE VQALIKIRTS FEQKFRVMGY TSSYVWDEIS ARMQKMGYHR TGKNCRSKWE  360
NMNSYFKRSL GTGEKKRRDS SRMPYFNELE RLYKNEVFCS SITPNQRTGE DSESDVKVNR  420
RTN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038779
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100387790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.13e-29Trihelix family protein