PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038550
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 500aa    MW: 52540.4 Da    PI: 6.8544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038550genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.4e-063854231154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Lus10038550 385 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 423
                  5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.512374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-9384432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-6384427No hitNo description
SuperFamilySSF474591.16E-11384440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MADEFNTSSI NWWDSTSRTD GGGGAAAASS SSGGGGGGCF SWASTPDMSD AVKSGGGSGG  60
GRSSLDSVSV STTADNSSAD HIHMMGLGLS SHAMDWNQAL LRGEKGTDHH HHQHQSSFRS  120
MLQIENLNST PPIYNEPGGG GGGAGGGLWR ERSTSSVYSS ENSNSMNNEF KQIARGFSLD  180
QPTAVHDFCH LNPPDTSATG FQLGSGGGGV MFEGGGEVLL GSEPNQHASL MGNYPPPSYG  240
GGGGTSTSTA TAANFGIVGT GSNDLSSVNW SSNNNKVPQF LRSNSPPPKH SQLHFSNNAP  300
FWNASGAMTT DVRPPGGGFF PQSSPQQHHH FPAAASTFDD KPPKNIGEER NSSALVVVKK  360
SEGGGGTNKR SRNETAASTL PAFKVRKEKM GDRITALQQL VSPFGKTDTA SVLSEAIEYI  420
KFLHDQINVL STPYMKSGVP IHHQQQSCDH HHQKSKDTAE AQKDLRSRGL CLVPVSSTFP  480
VTHETTVDFW TPTFGGTFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038550
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021593920.11e-133transcription factor bHLH123-like isoform X1
TrEMBLA0A2C9UDY71e-131A0A2C9UDY7_MANES; Uncharacterized protein
STRINGLus100385500.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-57bHLH family protein