PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10038432 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 28948.8 Da PI: 4.6757 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.5 | 8.5e-07 | 142 | 186 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + + r+RR+ri + +eL +l+P + K++ ae+ + A +Y++ Lq Lus10038432 142 SVAARQRRRRISGKTQELGKLIPGgN------KMNTAEMFQAAANYVRFLQ 186 5677*******************955......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.41E-11 | 134 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.10E-9 | 134 | 190 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.5E-9 | 135 | 190 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.62 | 136 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.8E-8 | 142 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MALSFCSSYP EYQLPFLTTE EVSDFDPDSL LLPFAHDFED DGAAAGAQLQ LDSDGLISLS 60 PTEAATFPLN ELNPKRQRTF PANYDHYCYN PLPWELNILQ HGYPNFPDLI IPAVAAPVMP 120 QLETPAGDNA KAEKKQSLSA QSVAARQRRR RISGKTQELG KLIPGGNKMN TAEMFQAAAN 180 YVRFLQCQIS ILQLMGGDDQ SPSPPNELQT ILASHRIQHK LCSERSCLVP RELLLSLVNR 240 PELQSVTEEI DELLLVKKEQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10038432 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10038432 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3459 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34820.1 | 1e-24 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10038432 |