PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10038310

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Dof

Protein Properties

Length: 257aa MW: 28312.7 Da PI: 8.6779

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10038310	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	112.5	1.9e-35	45	101	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++ l+cprCdstntkfCy+nny+ sqPr+fCkaC+r+WtkGG+lrnvPvGggr++++ Lus10038310 45 SEPLNCPRCDSTNTKFCYFNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKNKR 101 57899*********************************************9966554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-23	44	101	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	47	100	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.354	48	102	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	50	86	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MGLRTKQVSK DLVLDWSQST LVNPPPDQTA RKQHQKNPDQ NQSRSEPLNC PRCDSTNTKF 60 CYFNNYNKSQ PRHFCKACKR HWTKGGTLRN VPVGGGRKNK RFSNPNGGNN IGKIINKVSP 120 KMVIQAHQRP KQSIQENRAC PNDVVLQRLM TTSPLPPPEI GAGVNFTCGE MGSSIFAQGL 180 SFTYSAAGFE FPGSSSATAT WQVPSTISDE KSMVIDDVVA TTANDASYWN WDDMDSFVSG 240 ADLNIPWDVD DSEVKP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10038310

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX174448	0.0	JX174448.1 Linum usitatissimum clone LuBAC395P20, complete sequence.
GenBank	KX018623	0.0	KX018623.1 Linum usitatissimum clone 44E4_FAD3A_M5791_28, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021599985.1	2e-57	dof zinc finger protein DOF1.4-like
STRING	Lus10038310	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	3e-29	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Lus10038310