PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10038279
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 389aa    MW: 42178 Da    PI: 6.8497
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10038279genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.37.3e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W+ Iar     Rt+ q+ s+ qky
      Lus10038279 126 PWTEEEHRLFLIGLQKFGKGDWRGIARNYVVSRTPTQVASHAQKY 170
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.882119175IPR017930Myb domain
SuperFamilySSF466891.05E-16121176IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-18122174IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.9E-11123169IPR009057Homeodomain-like
SMARTSM007173.2E-10123173IPR001005SANT/Myb domain
PfamPF002491.4E-10126170IPR001005SANT/Myb domain
CDDcd001672.29E-9126171No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MMTRRCSHCS NNGHNSRTWP KRSTCPTRSA APSGGASSSS LLSSAGVKLF GVRLTDGSFI  60
KKSASMGNLS AAHYHSSSSA AASPNHDSPV SDHVRDSGRP ADGYLSDDPA HGSSFSRRGD  120
RKKGVPWTEE EHRLFLIGLQ KFGKGDWRGI ARNYVVSRTP TQVASHAQKY FIRQSNATRR  180
KRRSSLFDMV PDVASDPQPV LEDKDKEELP SLQQSRENDD SEDTLPSLNL SLKPEYEPME  240
TMSEEPAMQE EEEPNETTMG SIESKPSELL TSTALGSIEF TPYVHGFFPV HVPVPYTYWP  300
VDTVPIEEKS MVAETSKVLR PVAVVPKEPV NVEELVGISH LSLADSAGLK LTAEAPRQSA  360
FHAKAQGSGS DIVVGKGKKG SSNSIEAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10038279
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002515966.11e-146transcription factor MYBS3 isoform X2
TrEMBLB1Q4U51e-149B1Q4U5_BRUGY; Myb transcription factor
STRINGLus100382790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77193346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.12e-76MYB_related family protein