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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10037755 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 174aa MW: 19942.3 Da PI: 8.8567 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 110.6 | 2.2e-34 | 2 | 152 | 228 | 374 |
GRAS 228 LklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 +k+v+sl P v+vv+e ea+hns++F +rf+eal + +a fd++++ + + e+r+ vE+++l+++i+n+v +e ++r+ r + + Wr+ + ++ Lus10037755 2 MKFVRSLHPWVMVVIETEANHNSPDFGQRFVEALFTSVARFDCVAECIEDDCtaEARTAVEEVYLNERIRNMVVAERDDRVIRDVRIAVWRKYFARCR 99 689*****************************************9998766577******************************************** PP GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaWr 374 + +++ls+ a + akl++++ + v ++++sl+lgWkd pLv+vSaW+ Lus10037755 100 MLEIQLSKLALNHAKLVVSRLPcAASCLVRvDNRKSLLLGWKDTPLVFVSAWK 152 **********************7666666646678999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.75 | 1 | 130 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.3E-32 | 2 | 152 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MMKFVRSLHP WVMVVIETEA NHNSPDFGQR FVEALFTSVA RFDCVAECIE DDCTAEARTA 60 VEEVYLNERI RNMVVAERDD RVIRDVRIAV WRKYFARCRM LEIQLSKLAL NHAKLVVSRL 120 PCAASCLVRV DNRKSLLLGW KDTPLVFVSA WKFVGRNRKP RIVVDDTTSS LIA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10037755 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017977950.1 | 6e-42 | PREDICTED: DELLA protein RGL1 | ||||
STRING | Lus10037755 | 1e-123 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17490.1 | 6e-13 | RGA-like protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Lus10037755 |