PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037753
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 509aa    MW: 57169.5 Da    PI: 8.1673
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037753genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS245.91.6e-751164893374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshlt 97 
                  e Ll+ A+ v +++   a++ +     l+sp+g+p+qR+++yf++AL++++ +++ ++y + + ++ ++ + + +l + ++    +e +P++++++ +
  Lus10037753 116 EYLLSSADKVGNHQYDDANRWIDLCDCLSSPTGNPVQRIVHYFARALREKIEKETGRIYPSSNGTSFNSLSNVLRLPSPSMvlsVHERFPYYRMQQAA 213
                  67999************************************************999999988888887666444444444445699************ PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    qa+ e++ +++r+H iD++i+ Gl+W+ L+qa  +R+  +   +RiT++     g+ e +++tg+rL++fA++ g++f f+++++    dl+ +++
  Lus10037753 214 SVQAMAESAGKAKRIHGIDLQIKSGLHWIGLMQAVETRTdYPIEFFRITALCT---GQVEPVQTTGDRLSEFARSKGINFCFKIVMVGCALDLTDSMF 308
                  ***************************************666679*******9...89**************************999999******** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres....eerikvEre 288
                  +++++E++ V   ++  ++ +++  +e     +++++++l+P+++vv+e+e + ns+ F +rf+e+l  y a+fds+++ +++ +    e r+ +E  
  Lus10037753 309 EMDEKESVMVYAEHSFATMISQPDRMEV----LMRVMRRLNPRIMVVTEKEGNNNSPHFSTRFVETLFNYGAVFDSVDTCMGKGDrdeeECRMYLESG 402
                  *******************966666666....************************************************998877777889****** PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ++gr i+n+va eg+er+ r  ++  Wr+ ++++ + + +ls  + +q+kl+ ++ + ++  +v  + +++v+gWk+ p++svS W+
  Lus10037753 403 IMGRMISNIVASEGEERVIRGVSVDVWRAFFRRFEMVEKKLSPVVWEQMKLVQETAGnGEFCTVGRDGKAMVIGWKGTPMFSVSTWK 489
                  **************************************************9888888455478888899999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.10488468IPR005202Transcription factor GRAS
PfamPF035145.5E-73116489IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDDHASILPA KKRSWQEIFF QPTNHASPLT STTFHLLNHR GKSGIGLHHP AVNSTAAAAG  60
RRKPLSIEEV ITLAATRIFR CSNSGQVGIP SLLNIPFDPS ISGLSIDDQS NVKLAEYLLS  120
SADKVGNHQY DDANRWIDLC DCLSSPTGNP VQRIVHYFAR ALREKIEKET GRIYPSSNGT  180
SFNSLSNVLR LPSPSMVLSV HERFPYYRMQ QAASVQAMAE SAGKAKRIHG IDLQIKSGLH  240
WIGLMQAVET RTDYPIEFFR ITALCTGQVE PVQTTGDRLS EFARSKGINF CFKIVMVGCA  300
LDLTDSMFEM DEKESVMVYA EHSFATMISQ PDRMEVLMRV MRRLNPRIMV VTEKEGNNNS  360
PHFSTRFVET LFNYGAVFDS VDTCMGKGDR DEEECRMYLE SGIMGRMISN IVASEGEERV  420
IRGVSVDVWR AFFRRFEMVE KKLSPVVWEQ MKLVQETAGN GEFCTVGRDG KAMVIGWKGT  480
PMFSVSTWKF FRSAKLVSGR KHLRVEFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2512248827378Protein SCARECROW
5b3h_A3e-2512248826377Protein SCARECROW
5b3h_D3e-2512248826377Protein SCARECROW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037753
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100377530.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-40RGA-like 1