PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10037670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | AP2 | ||||||||
Protein Properties | Length: 358aa MW: 39171.6 Da PI: 9.4325 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.5 | 6.1e-12 | 96 | 152 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g Lus10037670 96 SQFRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 152 789******************433.44555535555.779999**************98 PP | |||||||
2 | AP2 | 47.4 | 4.9e-15 | 197 | 246 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Lus10037670 197 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 246 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.31E-14 | 96 | 162 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.57E-17 | 96 | 162 | No hit | No description |
SMART | SM00380 | 1.2E-22 | 97 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-12 | 97 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-9 | 97 | 152 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.003 | 97 | 160 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 98 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-18 | 195 | 256 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.82E-23 | 195 | 256 | No hit | No description |
SMART | SM00380 | 2.1E-34 | 196 | 260 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.137 | 196 | 254 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.8E-19 | 196 | 254 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.4E-10 | 197 | 246 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-6 | 236 | 256 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MVVPTRDIIF PDNYTPAAAT YHFDGGGSGS AWLRQEQQEV CGGDSRNQHK LSLSSMVSPV 60 MSDGLAVVAA AGGDNGDGKG KRVNGKAVDT FGQRTSQFRG VTRHRWTGRY EAHLWDNSCR 120 KEGQTRKGRQ GGYDKEEKAA RAYDLAALKY WGPSTHINFP MSTYEKELEE MKHMTRQEFV 180 ANLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA 240 AIKFRGTSAV TNFDISRYDV KRICSSSTLI ASDLAKRASP PAPAATSSGS PVVPLLAISS 300 GECSDDRLHT DHPHHHHHVV WNKDGGSDVD SGPGGAATRC LDLVGHPVPM FALWNQR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10037670 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624720.1 | 1e-138 | AP2-like ethylene-responsive transcription factor AIL1 isoform X2 | ||||
Refseq | XP_028206125.1 | 1e-138 | AP2-like ethylene-responsive transcription factor AIL1 isoform X2 | ||||
Swissprot | Q84Z02 | 1e-120 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A1Q3CRJ8 | 1e-138 | A0A1Q3CRJ8_CEPFO; AP2 domain-containing protein | ||||
STRING | Lus10037670 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10274 | 31 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-116 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10037670 |
Publications ? help Back to Top | |||
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