PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037670
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 358aa    MW: 39171.6 Da    PI: 9.4325
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037670genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56.1e-1296152155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Lus10037670  96 SQFRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 152
                  789******************433.44555535555.779999**************98 PP
2AP247.44.9e-15197246355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Lus10037670 197 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 246
                  9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1496162IPR016177DNA-binding domain
CDDcd000185.57E-1796162No hitNo description
SMARTSM003801.2E-2297166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-1297161IPR001471AP2/ERF domain
PfamPF008475.5E-997152IPR001471AP2/ERF domain
PROSITE profilePS5103217.00397160IPR001471AP2/ERF domain
PRINTSPR003671.9E-698109IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-18195256IPR016177DNA-binding domain
CDDcd000181.82E-23195256No hitNo description
SMARTSM003802.1E-34196260IPR001471AP2/ERF domain
PROSITE profilePS5103219.137196254IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-19196254IPR001471AP2/ERF domain
PfamPF008479.4E-10197246IPR001471AP2/ERF domain
PRINTSPR003671.9E-6236256IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MVVPTRDIIF PDNYTPAAAT YHFDGGGSGS AWLRQEQQEV CGGDSRNQHK LSLSSMVSPV  60
MSDGLAVVAA AGGDNGDGKG KRVNGKAVDT FGQRTSQFRG VTRHRWTGRY EAHLWDNSCR  120
KEGQTRKGRQ GGYDKEEKAA RAYDLAALKY WGPSTHINFP MSTYEKELEE MKHMTRQEFV  180
ANLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA  240
AIKFRGTSAV TNFDISRYDV KRICSSSTLI ASDLAKRASP PAPAATSSGS PVVPLLAISS  300
GECSDDRLHT DHPHHHHHVV WNKDGGSDVD SGPGGAATRC LDLVGHPVPM FALWNQR*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037670
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624720.11e-138AP2-like ethylene-responsive transcription factor AIL1 isoform X2
RefseqXP_028206125.11e-138AP2-like ethylene-responsive transcription factor AIL1 isoform X2
SwissprotQ84Z021e-120CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1Q3CRJ81e-138A0A1Q3CRJ8_CEPFO; AP2 domain-containing protein
STRINGLus100376700.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-116AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]