PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037554
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HD-ZIP
Protein Properties Length: 762aa    MW: 84500.3 Da    PI: 6.3216
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037554genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.48.9e-2292147156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  Lus10037554  92 RKKYHRHTPDQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 147
                  7999************************************************9877 PP
2START208.62.4e-652805012206
                  HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
        START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                  + ++a++el+k+a+a++p+Wv+s     e++n+de++++f  +++     ++ea+r++g+v+ +l++lv+ ++d++ qW+e+++    ka t++vi++
  Lus10037554 280 VVNQAMEELQKMATARDPLWVRSFetgrEMLNYDEYMKQFGGGGSktnaANVEASRDCGLVFFELHRLVNCFMDVN-QWKEMFPwliaKAVTVDVICE 376
                  56789*******************9***************555559999***************************.********************* PP

                  T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
        START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                  g      ga+qlm+ae q+l+p+vp R+ +f Ry++ql+a+ w ivdvS+d+ +++  ++s+ +++++pSg++i++ sngh+kv+wveh ++k+   +
  Lus10037554 377 GdgrtghGAIQLMFAEVQMLTPMVPtRELYFMRYCKQLSAEEWGIVDVSIDEVEENI-DASLDKCRKRPSGCIIHDQSNGHCKVVWVEHLECKKTAGS 473
                  *******************************************************98.9*************************************** PP

                  HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 179 wllrslvksglaegaktwvatlqrqcek 206
                  +++r +v+sgla+gak+w+++lq qce+
  Lus10037554 474 SMYRTMVNSGLAFGAKHWLSALQLQCER 501
                  **************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-2178143IPR009057Homeodomain-like
SuperFamilySSF466891.17E-1985150IPR009057Homeodomain-like
PROSITE profilePS5007118.13989149IPR001356Homeobox domain
SMARTSM003892.1E-1991153IPR001356Homeobox domain
PfamPF000463.9E-1992147IPR001356Homeobox domain
CDDcd000867.97E-1896147No hitNo description
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PROSITE profilePS5084835.189270504IPR002913START domain
SuperFamilySSF559615.77E-29273501No hitNo description
CDDcd088753.12E-98274500No hitNo description
SMARTSM002342.0E-56279501IPR002913START domain
PfamPF018522.5E-53280501IPR002913START domain
SuperFamilySSF559612.06E-11544726No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MSNHNQAHPA LSLTLAGIFR GTGSTTTNNA GIAACINGDQ VEISSENSGA AMTTRRSNSD  60
GVEFDHDDHD DDEEEEEESN VEDRTKRKKK KRKKYHRHTP DQIREMEALF KESPHPDEKQ  120
RQQLSKQLGL APRQVKFWFQ NRRTQIKAIQ ERHENSLLKA EIDKLRDDNK FLRDTIAANV  180
SSSTGGGCLK CGGGDHPPLS FTDDKHLRVE NAKLKAEVEN LRVLVEKHAP LAGTGTATTS  240
SESSDHHQHQ NQERISTTTA MSLDFYSRVF GLEKAKVQEV VNQAMEELQK MATARDPLWV  300
RSFETGREML NYDEYMKQFG GGGSKTNAAN VEASRDCGLV FFELHRLVNC FMDVNQWKEM  360
FPWLIAKAVT VDVICEGDGR TGHGAIQLMF AEVQMLTPMV PTRELYFMRY CKQLSAEEWG  420
IVDVSIDEVE ENIDASLDKC RKRPSGCIIH DQSNGHCKVV WVEHLECKKT AGSSMYRTMV  480
NSGLAFGAKH WLSALQLQCE RLVFFMATNV PTKDSTGVAT LAGRKSILRL AQRMTSTFCC  540
AIGASSYRTW TKVTSKTGED IRVSSRKNFN DPGEPFGVIL CAVSSVWLPV SPPALFDFLR  600
YEETRNEWDI MSNGGAVQSI ANLAKGQDRG NAVTLQMIKA DENTTWILQD SCTNAYESMI  660
VYAPVDIPGM KTVLTGCDSS NISILPSGFS ILHDGLDSRP QVITSLEKEK GSGGSLLTMA  720
FQILTSTVPA AKLTADSVES ASALVSCTLR NIRTSLECEE S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18593KRKKKKRKK
28691RKKKKR
38792KKKKRK
48793KKKKRKK
58993KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037554
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073376.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A067KZK40.0A0A067KZK4_JATCU; Uncharacterized protein
STRINGLus100375540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]