PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10037296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | G2-like | ||||||||
Protein Properties | Length: 485aa MW: 52477.4 Da PI: 5.767 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.5 | 1.1e-31 | 273 | 327 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F+ av++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYR+ Lus10037296 273 KPRMRWTPELHESFLAAVNKLDGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRM 327 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-30 | 271 | 328 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-17 | 272 | 327 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-24 | 273 | 328 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.1E-8 | 275 | 326 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.9E-22 | 364 | 410 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MKSQSVVSVM KSESPGPFCA SLSPIHNFFG VESDGNNKST LTSDQCSSSS SRPSPFIRSD 60 SLNSSNSLRL STSAAEHEKC SGPDSSLSYG SQVSKGATFQ RSSVFCTSLY SSSSLGKQLP 120 FLPHPPPPTA ACSSHQSFSA VVASAKSPPI FSDDMMSTNS TYDDDQSDAL MKNFLNLAGD 180 ASEGSFHGGM SCAIDSLAFS EHLELQFLTD ELDMSITDHG ENPRLDEIYG TPETLPEKPV 240 TGSTSDENHA SAAPPVDALS GQPSPTGAAA AHKPRMRWTP ELHESFLAAV NKLDGAEKAT 300 PKGVLKLMNV EGLTIYHVKS HLQKYRMAKY LPERKEEKKS SSSEEKKPTF SSLEFDGRRK 360 GNLQISEALR MQMEVQKQLH EQLEVQKALQ VRIEEHARYL EKMLEEQQKA GTALMSPKSL 420 NVPSQESKPA SAESASKADS ASTSSPYPLT GGEVGDGNKR ECKKRIRVEE EEEKRDVEVG 480 NVVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-26 | 273 | 330 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-26 | 273 | 330 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-26 | 273 | 330 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-26 | 273 | 330 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-26 | 273 | 330 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-26 | 273 | 330 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-26 | 273 | 330 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-26 | 273 | 330 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10037296 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021681662.1 | 1e-160 | myb family transcription factor PHL6 | ||||
Refseq | XP_021681663.1 | 1e-160 | myb family transcription factor PHL6 | ||||
Refseq | XP_021681664.1 | 1e-160 | myb family transcription factor PHL6 | ||||
Refseq | XP_021681666.1 | 1e-160 | myb family transcription factor PHL6 | ||||
Swissprot | Q949U2 | 1e-121 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A2K1ZLT0 | 1e-156 | A0A2K1ZLT0_POPTR; Uncharacterized protein | ||||
STRING | Lus10037296 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13469 | 19 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 1e-102 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10037296 |
Publications ? help Back to Top | |||
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