PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10037169
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family G2-like
Protein Properties Length: 293aa    MW: 32145.7 Da    PI: 9.5777
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10037169genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.3e-311064155
      G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                 kprl+Wt +LH+ F++av++LGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl
  Lus10037169 10 KPRLKWTADLHSLFIDAVNRLGGPEKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 64
                 79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-28866IPR009057Homeodomain-like
SuperFamilySSF466894.3E-15965IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-221065IPR006447Myb domain, plants
PfamPF002491.3E-71263IPR001005SANT/Myb domain
PfamPF143791.2E-22108154IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MNLVLSTDAK PRLKWTADLH SLFIDAVNRL GGPEKATPKS LMRVMGIPGL TLYHLKSHLQ  60
KYRLGKSQQS LTSIETKQEI LFDAKSQLIQ SKEISTDGNN KPIKESLQIA HALQVQMEVQ  120
RKLHEQIEVQ KHLQLRIEAQ GKYLQSVLNK AQETLAGYGS SSVGIELAKA ELSKLVSMVN  180
SGCTSSCISD LSETEAGSSS PGRKPVNKTA LCSVESSLTS AESSDEMEQK SNHGTSNNQG  240
KKRRNGKIAE QPMAKRFRSS EMLITTIDLN RKCETDVIET GPRTIDLNSN VV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-18966158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10037169
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461762.11e-107myb family transcription factor PHL8
SwissprotF4I2741e-81PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A2K1ZE561e-101A0A2K1ZE56_POPTR; Uncharacterized protein
STRINGLus100371690.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.17e-84G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]