PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036978

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

Trihelix

Protein Properties

Length: 385aa MW: 43921.5 Da PI: 6.2018

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036978	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81	1.7e-25	71	150	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e ++Li++rrem+ ++++k++k+lWe++s +mr++gf rsp++C++kw+nl k++kk+k+++k+ s +++y+++++ Lus10036978 71 WVQDEMRCLIAMRREMDGLFNTSKSNKHLWEQISLRMRDKGFDRSPTMCTDKWRNLLKEFKKVKHQDKG-----SAKMSYYKEID 150 *******************************************************************98.....56788999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	1.36E-6	37	47	No hit	No description
PROSITE profile	PS50090	8.014	63	127	IPR017877	Myb-like domain
SMART	SM00717	4.5E-5	67	129	IPR001005	SANT/Myb domain
CDD	cd12203	4.08E-26	69	134	No hit	No description
Pfam	PF13837	4.9E-19	70	152	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MAPNSQDNMI IEVVSPNCDL HPLPLQQHTD NPNTNPPPPP PPPPPPPMML GESSGEDTHE 60 IRAPKKRAET WVQDEMRCLI AMRREMDGLF NTSKSNKHLW EQISLRMRDK GFDRSPTMCT 120 DKWRNLLKEF KKVKHQDKGS AKMSYYKEID EILKERGKTT SQQQQQYKCP TPSSKVDSFM 180 QFAEKGFEET SISFGPVEAS GRPTLNLERR LDHDGHPLAI TATDAVGASG VPPWNWRETP 240 ASGSESQSYG GRVISVKYGD YLRKIGIDGT ADAIKEAIRS AFRLRTKRAF WLEDEDQVIR 300 SLDRDMPLGN YSLHLDEGLA IKVCLYDETD HIPVHTEEKL FYTEDDYREF LSRRGWTCLR 360 EVDGYRNIDS MDDLRPGAMY RGVN*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MAPNSQDNMI IEVVSPNCDL HPLPLQQHTD NPNTNPPPPP PPPPPPPMML GESSGEDTHE  60
IRAPKKRAET WVQDEMRCLI AMRREMDGLF NTSKSNKHLW EQISLRMRDK GFDRSPTMCT  120
DKWRNLLKEF KKVKHQDKGS AKMSYYKEID EILKERGKTT SQQQQQYKCP TPSSKVDSFM  180
QFAEKGFEET SISFGPVEAS GRPTLNLERR LDHDGHPLAI TATDAVGASG VPPWNWRETP  240
ASGSESQSYG GRVISVKYGD YLRKIGIDGT ADAIKEAIRS AFRLRTKRAF WLEDEDQVIR  300
SLDRDMPLGN YSLHLDEGLA IKVCLYDETD HIPVHTEEKL FYTEDDYREF LSRRGWTCLR  360
EVDGYRNIDS MDDLRPGAMY RGVN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-44	65	148	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036978

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012085610.1	0.0	trihelix transcription factor GT-1 isoform X2
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A067JSB4	0.0	A0A067JSB4_JATCU; Uncharacterized protein
STRING	Lus10036978	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6817	32	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Lus10036978

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]