PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 351aa MW: 38066.5 Da PI: 7.3654 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.4 | 2.6e-32 | 174 | 231 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp++v++tYeg+H h+ Lus10036891 174 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTTVITTYEGQHCHH 231 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.1E-33 | 158 | 232 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-28 | 165 | 231 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.746 | 168 | 233 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-37 | 173 | 232 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-25 | 174 | 231 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDDEGNNNSS SNHPDPTANH HDNFNLIGDS SCWTSALGSS YLFFPGIGER SDSSSILSDF 60 GWSGAHPHPP LFHSSTEELE IGQTNNLLCS TESSSGLQGS SGGGRGEAPS VSNPSVSNPS 120 VSSSSSEDPE KSTGSGGKPP EIPSNKGAGK KKGQKRIRQP RFAFVTKSEI DHLEDGYRWR 180 KYGQKAVKNS PFPRSYYRCT NSKCTVKKRV ERSSEDPTTV ITTYEGQHCH HTVGFPRGAG 240 TFIGHHHHFH DLAPPYGPPM TSSMSSPHLY HPASAGIHRG GSGDAMMMTQ QPPRQPHQVQ 300 VEQGSESDDD RRDGRGVGER EPGETRQKHR RFPTDEGLLG DLVPPGMRNR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-25 | 166 | 230 | 10 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 7e-25 | 166 | 230 | 10 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036891 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002274549.1 | 7e-83 | PREDICTED: probable WRKY transcription factor 57 | ||||
TrEMBL | A0A2N9J2U2 | 4e-82 | A0A2N9J2U2_FAGSY; Uncharacterized protein | ||||
STRING | Lus10036891 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10814 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 9e-63 | WRKY DNA-binding protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Lus10036891 |