PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 372aa MW: 41144.9 Da PI: 5.0274 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.3e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT++Ed +++ v+++G+g+W++++++ g++R++k+c++rw++yl Lus10036660 15 RGLWTPDEDAKILAHVAKYGTGNWTSVPKKAGLRRCGKSCRLRWNNYL 62 788********************************************7 PP | |||||||
2 | Myb_DNA-binding | 44.3 | 4.2e-14 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +eE+e +v+++ G++ W+ Ia+ ++ gRt++++k++w++ Lus10036660 70 TFKPEEEEMIVRLHSAIGSR-WSIIAQQLP-GRTDNDVKNHWNT 111 5889****************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-24 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.299 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-30 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-17 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.80E-12 | 18 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-22 | 66 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.033 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-9 | 70 | 113 | No hit | No description |
Pfam | PF00249 | 2.7E-12 | 70 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MVRPPACCGN VNLKRGLWTP DEDAKILAHV AKYGTGNWTS VPKKAGLRRC GKSCRLRWNN 60 YLRPDLNHET FKPEEEEMIV RLHSAIGSRW SIIAQQLPGR TDNDVKNHWN TKLRKKLSEM 120 GIDPVTHKPF SQILTDYGNI NGGLSRSPPP TRIGSLSRDL KNATTTTTTT TTTVFVHNPL 180 PQSSVNFMES ESESEIMLPI SESFTIDTDN VKEEQSMDLL EQLQAIKLVT EAANRGDETV 240 TPPVASGNPS CCSSSSSTCS TTAAQEMTMM TMKSSPPAFS WRDFLLEDND DLDQLLPDGN 300 DDDPIIGRDQ LWSSGEKQRP PRQQQNCYGA AESNANGGPT ASSSFVDAIL DGDRRRDMFL 360 DFSSLLQDPN Y* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 12 | 117 | 4 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036660 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018819595.1 | 1e-112 | PREDICTED: transcription factor MYB35-like | ||||
TrEMBL | A0A2I4EJM1 | 1e-111 | A0A2I4EJM1_JUGRE; transcription factor MYB35-like | ||||
STRING | Lus10036660 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2942 | 34 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 8e-67 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10036660 |