PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036659
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 280aa    MW: 30873.4 Da    PI: 6.9529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036659genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-09147207455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...........TTS-.STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkas........kapskK.lsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +            + K   Ka +L + ++YI+sLq
  Lus10036659 147 SHSLAERARREKISERMKLLQDLVPGCNkqyllcvfYFFNDKvIGKALVLDEIINYIQSLQ 207
                  8*************************888*******8888888*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.59E-8141211No hitNo description
Gene3DG3DSA:4.10.280.102.9E-16143227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472143206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-15143228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-7147207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-9149212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDPPLINESS FSPANPASYS LAEIWPFHVQ GAAPAGGGGG LGLRMSNFGF SVGDRDGSAE  60
ESTVTDQSAG AGRKRRDFSS EDESSRMVST TSSGNELNES KNKRMKQSGS RNETDNSNPA  120
AAQRKPSEPP KQDFIHVRAR RGQATDSHSL AERARREKIS ERMKLLQDLV PGCNKQYLLC  180
VFYFFNDKVI GKALVLDEII NYIQSLQRQV EFLSMKLEAV NARMSMNLTM DSFNPKDIGS  240
RPFDANGMMY GQQATRDYVQ GPQEEWLHMQ VGGGFERSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036659
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3807414e-39FQ380741.1 Vitis vinifera clone SS0ACG35YM08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476705.11e-128transcription factor bHLH79
SwissprotQ9LV173e-84BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A067FUM31e-126A0A067FUM3_CITSI; Uncharacterized protein
TrEMBLA0A2H5NFU81e-126A0A2H5NFU8_CITUN; Uncharacterized protein
STRINGLus100366590.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.19e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]