PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | bHLH | ||||||||
Protein Properties | Length: 280aa MW: 30873.4 Da PI: 6.9529 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 2e-09 | 147 | 207 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...........TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas........kapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + + K Ka +L + ++YI+sLq Lus10036659 147 SHSLAERARREKISERMKLLQDLVPGCNkqyllcvfYFFNDKvIGKALVLDEIINYIQSLQ 207 8*************************888*******8888888*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.59E-8 | 141 | 211 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-16 | 143 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.472 | 143 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-15 | 143 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.1E-7 | 147 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.9E-9 | 149 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDPPLINESS FSPANPASYS LAEIWPFHVQ GAAPAGGGGG LGLRMSNFGF SVGDRDGSAE 60 ESTVTDQSAG AGRKRRDFSS EDESSRMVST TSSGNELNES KNKRMKQSGS RNETDNSNPA 120 AAQRKPSEPP KQDFIHVRAR RGQATDSHSL AERARREKIS ERMKLLQDLV PGCNKQYLLC 180 VFYFFNDKVI GKALVLDEII NYIQSLQRQV EFLSMKLEAV NARMSMNLTM DSFNPKDIGS 240 RPFDANGMMY GQQATRDYVQ GPQEEWLHMQ VGGGFERSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036659 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ380741 | 4e-39 | FQ380741.1 Vitis vinifera clone SS0ACG35YM08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006476705.1 | 1e-128 | transcription factor bHLH79 | ||||
Swissprot | Q9LV17 | 3e-84 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A067FUM3 | 1e-126 | A0A067FUM3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NFU8 | 1e-126 | A0A2H5NFU8_CITUN; Uncharacterized protein | ||||
STRING | Lus10036659 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 9e-78 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10036659 |
Publications ? help Back to Top | |||
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