PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036652
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 292aa    MW: 31607.4 Da    PI: 10.0029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036652genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-1376120347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ +  + G+g+W+ I+r + k+Rt+ q+ s+ qky
      Lus10036652  76 PWTEEEHKLFLIGLDKVGKGDWRGISRNFVKTRTPTQVASHAQKY 120
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.01769125IPR017930Myb domain
SuperFamilySSF466898.97E-1771123IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-1672123IPR006447Myb domain, plants
SMARTSM007171.4E-873123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-1075121IPR009057Homeodomain-like
PfamPF002491.8E-1076120IPR001005SANT/Myb domain
CDDcd001673.43E-876121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAASNTAAGV VGSPGEIMLF GVRVVVDSMR KRVSLNNLSQ YQQQHPSAKD KDEVVAAAGY  60
ASADDAPRSE RKRGVPWTEE EHKLFLIGLD KVGKGDWRGI SRNFVKTRTP TQVASHAQKY  120
FLRRLNLNRR RRRSSLFDIT TDTATGIEDQ SNPKEKMLGS NLLVVAAEPT KSKNSSTTIN  180
NFVPAAVMSA FSLSSSSSPT GEIPVDNLSS GQQQCINNGG SPHQNLILPV QHVDDPSSYT  240
HTTTTSSSRM IDLNLSSPPA DPFPLSLSLS SLTSDQRHFA YRTMMATALS A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00236DAPTransfer from AT1G74840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036652
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080161.15e-68transcription factor MYB1R1
TrEMBLA0A067KH701e-66A0A067KH70_JATCU; Uncharacterized protein
STRINGLus100366520.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.22e-47MYB_related family protein