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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036556 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 130aa MW: 13923.5 Da PI: 11.1125 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 7.9e-21 | 21 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge Lus10036556 21 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 71 689******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.0E-36 | 21 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-29 | 21 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.45E-30 | 21 | 80 | No hit | No description |
Pfam | PF00847 | 7.7E-16 | 21 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.534 | 21 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-8 | 22 | 33 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-21 | 22 | 79 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.6E-8 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MAGNIPVHAQ ISTTTAVKPR RFVGVRQRPS GRWVAEIKDS SQRVRLWLGT YDTPEEAARA 60 YDEAARALRG ENARTNFASS SDSKTATTNG SSPSAASSLA SPTPKPFSSL QAELSKNMQK 120 IMARNNGKD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 21 | 77 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036556 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613536.1 | 2e-46 | PREDICTED: ethylene-responsive transcription factor ESR1-like | ||||
TrEMBL | A0A2R6QS84 | 2e-44 | A0A2R6QS84_ACTCH; Ethylene-responsive transcription factor RAP2-11 like | ||||
TrEMBL | A0A4D9AK56 | 1e-44 | A0A4D9AK56_SALSN; EREBP-like factor | ||||
STRING | Lus10036556 | 1e-89 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8324 | 31 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 4e-18 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Lus10036556 |