PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10036515

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

MYB

Protein Properties

Length: 1568aa MW: 170167 Da PI: 5.9608

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10036515	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.4e-07	784	825	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W+ eE e+++d + G++ +k+I+ ++ ++t +c+++++k Lus10036515 784 CWSLEEREIFIDKLAICGKD-FKKISFYLE-HKTTADCIEFYYK 825 6***************99.*****.*********98 PP
2	Myb_DNA-binding	31.2	5.1e-10	993	1031	4	44
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 WT eE +v+av ++G++ ++ I+r++ +R+ +qck ++ Lus10036515 993 WTDEEKTAFVRAVSLYGKD-FAFISRCVR-TRSQEQCKVFF 1031 ***************99.*****.******776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-11	768	829	IPR009057	Homeodomain-like
PROSITE profile	PS51293	13.822	780	831	IPR017884	SANT domain
SMART	SM00717	2.2E-6	781	829	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	11.545	988	1039	IPR017884	SANT domain
SMART	SM00717	4.7E-9	989	1037	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.17E-9	991	1038	IPR009057	Homeodomain-like
Pfam	PF00249	5.3E-8	993	1031	IPR001005	SANT/Myb domain
CDD	cd00167	3.20E-7	993	1031	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-5	993	1032	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1568 aa Download sequence Send to blast
MPPEPLPWDR KKHESSSSSL GSTPRWRDCP AGHYGSHRDF SPRWAGGSTE FRRPSGHGKQ 60 GGWHLYADES GYGYGPSRSN DKMKEATNGR PLFSRGDGKC GRSGRDNRGP YGQRDWGAYS 120 WDMSNGSTNG PRRPYDVSND QMSVDDMLTC PPSHPPNSDF GSTWDQLQLR QQHGNNEDGG 180 NALGSGQRGD KDNSLDWRPL KWTRTGSLSS RGSGYSHSSS SMNLGAVKAN GGKNEMIPKN 240 GTPIHSTSGD VTVVRADSVT LSDETMSRKK PRLKWGEGLA KYEKKRVEGP ETSVTRDDTT 300 LFTNSLEPVH SRSSSLPDKS PRQMVYPECV SPATPSSIAC SSSPGVEDKV FCPVVSVDND 360 ASNLCGSPSV GSQGREEFSF SLEKLDMGSI PNLGSSLIEM IQSEDLCIVD SCFEKSTGMN 420 KLLVWKGNAL KALETTETEI DILENELKSL KSDSKSKLLG SSPSDSLTIS GHAIACSEQG 480 TLCRDDLCRP VSSMDEAVDG IPNPDDAFED GCAMDDDIDS PGTATSKFVE PLISVSDMVR 540 CTQHSGVAAD ESSNLMVEKG SALAACNVSS IHCNNNALLS ASKSSVEDGY SNLCTAILAS 600 NKESASTVGE EFYRLLPRDR CSVNHSGVAN ILSGQTDALV MKKFLARRRL MKIKEKIVAL 660 KFKSLQHLWR EDMHLLSVNK FKAKSQKKFE SSLRPIYSIH KKHRSSSRMR ICSPGSMGLV 720 LSPEMLNFSR KLLADCSVKV YRDKLKMPIQ ILDDSERRVS MFISGNGLVE DPFAVERERA 780 MINCWSLEER EIFIDKLAIC GKDFKKISFY LEHKTTADCI EFYYKNHKSD SFGKVKKNKQ 840 YKSLTNYLMS SGKKWNREMG TAPLDTLGAA SVVAAHPDRK MGSRKVSSSK IFIRGYDKCK 900 ILQGDDGNSE RLNNYDVLVN ERETAAADVL AGISGSMSSC ITTSADRAEG FYDYNARRTD 960 TTDRRPSISD VTQNVDEETC SDESCGEMDP ADWTDEEKTA FVRAVSLYGK DFAFISRCVR 1020 TRSQEQCKVF FSKANKCLGL DHIHSGIGKL DPSLSEDANE GGSDMEDATV DGSEEIPSKL 1080 DLDPLPRVMC TAGILKQDVS DGRVGINLET DLNVSDEKDV AGAIEEENLM AVDTVKGHLV 1140 QSTHLADGEV INGCGRVSLR MNGQTVQIES GVTEGERDCQ TKEVQHLPLD MGSSSDDSLV 1200 GNITQRQVEV NSVEKSSSMK VNNNLVSAVS VTLNSAATHC DKALDSGEIS GSVQENCSKL 1260 DGSGYVQPSV CCPVVNHGEY SESGCSKVQT LTEKVTMGNT SDAKLLLNAE QFMGNQLVAE 1320 EGSCLENSSN CEGQCSVPEL PLLSQPGSAT NMEKRSRNGD VKLFGKILSN PVSSSSSQKP 1380 VAAHGSGEKS TQPQRTLKFN GDHSADDTLV NFDKNNSAGV KNVPIRSYGF WDGSRIQTGL 1440 TSLPDSAILL AKYPAAFTNF QGSSSPKLDP VALATTSKNI ERSMNGVVSI HQRGDINSSS 1500 SSSNALLDFQ RYISTDGSKK VEQQEGGKGL ESRTVSDPVA AIKIHFAKAA DQNCGDSEAP 1560 AQGAMVK*

Sequence ? help Back to Top

Protein Sequence Length: 1568 aa Download sequence Send to blast

MPPEPLPWDR KKHESSSSSL GSTPRWRDCP AGHYGSHRDF SPRWAGGSTE FRRPSGHGKQ  60
GGWHLYADES GYGYGPSRSN DKMKEATNGR PLFSRGDGKC GRSGRDNRGP YGQRDWGAYS  120
WDMSNGSTNG PRRPYDVSND QMSVDDMLTC PPSHPPNSDF GSTWDQLQLR QQHGNNEDGG  180
NALGSGQRGD KDNSLDWRPL KWTRTGSLSS RGSGYSHSSS SMNLGAVKAN GGKNEMIPKN  240
GTPIHSTSGD VTVVRADSVT LSDETMSRKK PRLKWGEGLA KYEKKRVEGP ETSVTRDDTT  300
LFTNSLEPVH SRSSSLPDKS PRQMVYPECV SPATPSSIAC SSSPGVEDKV FCPVVSVDND  360
ASNLCGSPSV GSQGREEFSF SLEKLDMGSI PNLGSSLIEM IQSEDLCIVD SCFEKSTGMN  420
KLLVWKGNAL KALETTETEI DILENELKSL KSDSKSKLLG SSPSDSLTIS GHAIACSEQG  480
TLCRDDLCRP VSSMDEAVDG IPNPDDAFED GCAMDDDIDS PGTATSKFVE PLISVSDMVR  540
CTQHSGVAAD ESSNLMVEKG SALAACNVSS IHCNNNALLS ASKSSVEDGY SNLCTAILAS  600
NKESASTVGE EFYRLLPRDR CSVNHSGVAN ILSGQTDALV MKKFLARRRL MKIKEKIVAL  660
KFKSLQHLWR EDMHLLSVNK FKAKSQKKFE SSLRPIYSIH KKHRSSSRMR ICSPGSMGLV  720
LSPEMLNFSR KLLADCSVKV YRDKLKMPIQ ILDDSERRVS MFISGNGLVE DPFAVERERA  780
MINCWSLEER EIFIDKLAIC GKDFKKISFY LEHKTTADCI EFYYKNHKSD SFGKVKKNKQ  840
YKSLTNYLMS SGKKWNREMG TAPLDTLGAA SVVAAHPDRK MGSRKVSSSK IFIRGYDKCK  900
ILQGDDGNSE RLNNYDVLVN ERETAAADVL AGISGSMSSC ITTSADRAEG FYDYNARRTD  960
TTDRRPSISD VTQNVDEETC SDESCGEMDP ADWTDEEKTA FVRAVSLYGK DFAFISRCVR  1020
TRSQEQCKVF FSKANKCLGL DHIHSGIGKL DPSLSEDANE GGSDMEDATV DGSEEIPSKL  1080
DLDPLPRVMC TAGILKQDVS DGRVGINLET DLNVSDEKDV AGAIEEENLM AVDTVKGHLV  1140
QSTHLADGEV INGCGRVSLR MNGQTVQIES GVTEGERDCQ TKEVQHLPLD MGSSSDDSLV  1200
GNITQRQVEV NSVEKSSSMK VNNNLVSAVS VTLNSAATHC DKALDSGEIS GSVQENCSKL  1260
DGSGYVQPSV CCPVVNHGEY SESGCSKVQT LTEKVTMGNT SDAKLLLNAE QFMGNQLVAE  1320
EGSCLENSSN CEGQCSVPEL PLLSQPGSAT NMEKRSRNGD VKLFGKILSN PVSSSSSQKP  1380
VAAHGSGEKS TQPQRTLKFN GDHSADDTLV NFDKNNSAGV KNVPIRSYGF WDGSRIQTGL  1440
TSLPDSAILL AKYPAAFTNF QGSSSPKLDP VALATTSKNI ERSMNGVVSI HQRGDINSSS  1500
SSSNALLDFQ RYISTDGSKK VEQQEGGKGL ESRTVSDPVA AIKIHFAKAA DQNCGDSEAP  1560
AQGAMVK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	285	RKKPRLKWGEGLAKYEKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10036515

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012086506.1	0.0	uncharacterized protein LOC105645502 isoform X2
TrEMBL	A0A067K1T6	0.0	A0A067K1T6_JATCU; Uncharacterized protein
STRING	Lus10036515	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4986	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-105	MYB family protein

Link Out ? help Back to Top
Phytozome	Lus10036515