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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 233aa MW: 26023.9 Da PI: 8.0882 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 92.8 | 5.4e-29 | 70 | 227 | 2 | 149 |
GRAS 2 velLlecAeavss...gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPil 91 ve L++ Ae v + +d+++a +lL+ l+s++gdp+qR++ yf +AL++r+ +s ++ +p+ s+ n ++ l l+ +e P+ Lus10036460 70 VEYLMAPAEKVGNnrtHDHQEAIHLLNLCDCLSSKTGDPIQRIVYYFSQALRKRVDHSDPTRNCNNRPEMVSDPNaekalTTVPLRLLQSVQEKIPFR 167 66788888888662336778888888888889***********************9955544433333333333322344555555567799****** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgs 149 + ++ q +le v +++r+H+iD++i GlQW a++qaLasR e+ p l+iT+vg Lus10036460 168 AVVQMSGIQILLENVGSSKRIHVIDLQIRTGLQWTAMMQALASRWESRPieLLKITAVGT 227 *********************************************8887779******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.923 | 43 | 232 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.9E-26 | 70 | 227 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MAAVDRVRPE EFQLTQELST PEILRIAARR IMSISSSSNS IDLSSLMNNP FDLSSPSGLS 60 YQDAIRVELV EYLMAPAEKV GNNRTHDHQE AIHLLNLCDC LSSKTGDPIQ RIVYYFSQAL 120 RKRVDHSDPT RNCNNRPEMV SDPNAEKALT TVPLRLLQSV QEKIPFRAVV QMSGIQILLE 180 NVGSSKRIHV IDLQIRTGLQ WTAMMQALAS RWESRPIELL KITAVGTGTL KT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-15 | 102 | 225 | 33 | 147 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036460 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488851.1 | 2e-53 | DELLA protein RGL1-like | ||||
TrEMBL | A0A067G8R7 | 2e-52 | A0A067G8R7_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | Lus10036460 | 1e-171 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 5e-15 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10036460 |