PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036458
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 136aa    MW: 15292.7 Da    PI: 8.072
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036458genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS82.95.5e-262122194321
         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  + v+++Ea+ V + ++  ++l ++  +e     ++ +v++l+P+++vv+e + + n++ F +rf+eal  y a fds+ea ++re++ r+   r+++g
  Lus10036458   2 FGVEEKEAVLVYSEHSFATMLGKPDRIEA----LMLAVRRLNPQLMVVTEMDGNQNASHFGTRFVEALFNYGAAFDSVEACVGREDDVRR---RAMMG 92 
                  67899***************977666666....99***********************************************98887776...67799 PP

         GRAS 292 reivnvvacegaerrerhetlekWrerlee 321
                  r i nvvaceg+er+ r  +l+ Wr+ +++
  Lus10036458  93 RMIGNVVACEGRERVIRGVRLKVWRAFFKS 122
                  *************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.5631135IPR005202Transcription factor GRAS
PfamPF035141.9E-232122IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MFGVEEKEAV LVYSEHSFAT MLGKPDRIEA LMLAVRRLNP QLMVVTEMDG NQNASHFGTR  60
FVEALFNYGA AFDSVEACVG REDDVRRRAM MGRMIGNVVA CEGRERVIRG VRLKVWRAFF  120
KSNSYCVEIH LTAVN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036458
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100364582e-95(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-20SCARECROW-like 14