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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10036457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 250aa MW: 27546.3 Da PI: 7.9376 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 77.5 | 2.3e-24 | 73 | 221 | 1 | 146 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlt 97 lve Ll+ A+ v+++ +a+al+ +l+sp+g+p+qR ++ f++AL++r+a+++ + ++++ + +++ + l +e +P++++++l+ Lus10036457 73 LVEYLLSSADRVANNRCDEASALIDLCDHLSSPAGNPVQRTVHSFARALRERVAGETGSDQSTCTNNLFDDDVLRLPSPSILLfVHERFPYFRMQQLA 170 5789***************************************************55555555555555544433333333333689*********** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTg 146 + q + e+++ ++r+H iD++i+ Gl+W ++qaL +++ + l++T+ Lus10036457 171 TVQPMAESAAAARRIHCIDLNIKSGLHWTGFMQALETQAdnYKLDLLKVTA 221 ************************************998545566999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.808 | 47 | 249 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-22 | 73 | 221 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MINFLSSARG KSRQAPPLSI METINLAATK IPQCPNNSAH ANSAQVSIPS LLNVPFDRSI 60 SGVSFHDQKN VELVEYLLSS ADRVANNRCD EASALIDLCD HLSSPAGNPV QRTVHSFARA 120 LRERVAGETG SDQSTCTNNL FDDDVLRLPS PSILLFVHER FPYFRMQQLA TVQPMAESAA 180 AARRIHCIDL NIKSGLHWTG FMQALETQAD NYKLDLLKVT APVWVPSSRR SHRGVVDQFR 240 PVKESQLLV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10036457 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10036457 | 0.0 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 2e-11 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Lus10036457 |