PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036453
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB
Protein Properties Length: 303aa    MW: 33498.8 Da    PI: 6.109
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036453genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrW +eEd++l  +++++G g W++ ++  g+ R++k+c++rw +yl
      Lus10036453 14 RGRWAAEEDQILTAYIRLHGEGKWRSLPKDAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding46.49.4e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+e +v+++  lG++ W++Ia+ +  gRt++++ ++w+++l
      Lus10036453  67 RGNITKDEEEAIVKLHSSLGNR-WSLIAAQLS-GRTDNEIMNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.897961IPR017930Myb domain
SuperFamilySSF466891.17E-2511108IPR009057Homeodomain-like
SMARTSM007179.9E-111363IPR001005SANT/Myb domain
PfamPF002498.4E-131461IPR001005SANT/Myb domain
CDDcd001675.38E-81661No hitNo description
PROSITE profilePS5129424.01962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2365116IPR009057Homeodomain-like
SMARTSM007172.0E-1466114IPR001005SANT/Myb domain
PfamPF002491.3E-1267112IPR001005SANT/Myb domain
CDDcd001675.24E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWAAE EDQILTAYIR LHGEGKWRSL PKDAGLLRCG KSCRLRWINY  60
LRDDLKRGNI TKDEEEAIVK LHSSLGNRWS LIAAQLSGRT DNEIMNYWNS HLRRKIYTFH  120
TVGQPHSPCL ESSSSASSSS TSPSSTRSRN SKRPPSLVTA GGGSKEDHGE IAACGDQLQE  180
LRMDEEKVAE DHAAGPYEWL DSEMNRLIKS RVVLHEDSPS GEMKDADDHG GGGGGGSSCN  240
SNSSDNQRSS SVSQQWLDWE QITGGGEINY SSNHHHHHHN DVVWDEGEDD VLLSWLLDGV  300
DP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-211211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFlavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036453
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488875.13e-75transcription factor MYB111
RefseqXP_021608770.15e-75transcription factor MYB111-like
RefseqXP_024045697.15e-75transcription factor MYB111
SwissprotQ9FJ072e-75MY111_ARATH; Transcription factor MYB111
TrEMBLA0A067G0C91e-73A0A067G0C9_CITSI; Uncharacterized protein
TrEMBLA0A2C9W9401e-73A0A2C9W940_MANES; Uncharacterized protein
TrEMBLV4S7211e-73V4S721_9ROSI; Uncharacterized protein
STRINGLus100364530.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-74myb domain protein 111
Publications ? help Back to Top
  1. Pandey A,Misra P,Bhambhani S,Bhatia C,Trivedi PK
    Expression of Arabidopsis MYB transcription factor, AtMYB111, in tobacco requires light to modulate flavonol content.
    Sci Rep, 2014. 4: p. 5018
    [PMID:24846090]
  2. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Zhou Z,Schenke D,Miao Y,Cai D
    Investigation of the crosstalk between the flg22 and the UV-B-induced flavonol pathway in Arabidopsis thaliana seedlings.
    Plant Cell Environ., 2017. 40(3): p. 453-458
    [PMID:28032363]
  5. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  6. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]