PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036419
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CO-like
Protein Properties Length: 390aa    MW: 42243.4 Da    PI: 6.2599
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036419genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.8e-071865441
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..........Htvvp 41
                   C++++++++   C + ++ lC++C   +H g          H++++
  Lus10036419 18 LLCERCSSQPALVRCAEEKVSLCQNCNWMGHGGgsssnsasssHKRQT 65
                 57************************9999955777777888887765 PP
2CCT62.31.5e-21332375144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R +a++RYkeK+ktRkFeK++rY+sRK++A+ R+RvKGrFvk+ 
  Lus10036419 332 RSNAVMRYKEKKKTRKFEKRVRYASRKERADVRKRVKGRFVKAG 375
                  899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062032.7E-16332374IPR010402CCT domain
PROSITE profilePS5101715.398332374IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MRCRSAANAL SKRHSRTLLC ERCSSQPALV RCAEEKVSLC QNCNWMGHGG GSSSNSASSS  60
HKRQTINCYS GCPSASELSS IWSFVLDFPE AETSTMYEQG MGLMSIAENV ATNSWPSSND  120
NQNQGGSNMT SRDVGKSSVW DNGSRSRTMP PESSANSDNS ARPASSTMPK LGYPGSKGPT  180
FREEDDGLYD DFNMDEMDLN LENYDELFDG GDAFEHGGMD SLFGTKDMSV ADPSYHSGAA  240
AEGSSAGRMN SMQQQQQPTC SNAASADSIM STKTEPAVCL TGRQLHSNLS FSGVTGESSG  300
GDYQDCGVSP MLLMGEPPWG SPCAEGSPSA NRSNAVMRYK EKKKTRKFEK RVRYASRKER  360
ADVRKRVKGR FVKAGETYDY DPLSQTRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036419
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015880870.11e-169zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_015880871.11e-169zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_024928499.11e-169zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-110COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A0B2PSA81e-163A0A0B2PSA8_GLYSO; Zinc finger protein CONSTANS-LIKE 9
TrEMBLK7LYE41e-163K7LYE4_SOYBN; Uncharacterized protein
STRINGLus100364190.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-92B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]