PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036303
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ARR-B
Protein Properties Length: 569aa    MW: 61923.3 Da    PI: 6.2044
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036303genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.45.7e-27224277155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r++W+p+LH++Fveav q+ G +kA+Pk+ile+m+v+gLt+e+v+SHLQk+R+
  Lus10036303 224 KARVVWNPQLHKKFVEAVYQI-GFDKAVPKKILEMMDVEGLTRENVASHLQKFRM 277
                  68*******************.********************************8 PP
2Response_reg79.88.9e-27231311109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + ++ l+++l+k +y +v+ ++++  al++l+ek+  +Dl++ D++mp+mdG++ll++ ++e  ++p+i+v++h+e+e++ + +  Ga 
   Lus10036303  23 VLVVDDDMVCLRYLESLLRKCHY-QVTGTSQALGALQILREKKgeFDLVMSDVNMPDMDGFKLLEHVEFEM-DIPVIMVSSHSEKELVYKGVTHGAV 117
                   89*********************.***************999999**********************9976.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +ee+ +
   Lus10036303 118 DYLLKPVRMEEVKN 131
                   ********999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.12E-3419147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.4E-3920156No hitNo description
SMARTSM004489.3E-3121133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.80322137IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.2E-2323131IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.40E-2824136No hitNo description
SuperFamilySSF466893.05E-18221281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-28221281IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-23224277IPR006447Myb domain, plants
PfamPF002492.2E-6226275IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MATADSSDSG SFGGDFIPSE LRVLVVDDDM VCLRYLESLL RKCHYQVTGT SQALGALQIL  60
REKKGEFDLV MSDVNMPDMD GFKLLEHVEF EMDIPVIMVS SHSEKELVYK GVTHGAVDYL  120
LKPVRMEEVK NIWQHVVRKR KMSAKNKKSK SSSSPEQGNH QDDNNSGPPN NQGTSAPSSG  180
NSDPNGGKSS KKRKDNEGDE EDGGHNVSDE NGREENEESG TQKKARVVWN PQLHKKFVEA  240
VYQIGFDKAV PKKILEMMDV EGLTRENVAS HLQKFRMYLK KAGNIGRLPE VDELRYVPRF  300
PGGYQPAGRY NSPSNLIPRR LSTSLPSSGI IIQQQTNLLN NIAEQMQQHQ QPSSVFPSGE  360
SSMLFPPKHI SFNNSTGFLG SSSSSNIRVA PSSSPNSMMM LQPAPPHNIM AGGGGAFGGQ  420
QRPLNQPSPF GLMHHGSSSN FDAVQLPKLP PTSFDFSTSN LMGGNVIDDY SPSILNSLNN  480
PFGAMNSLTG SSNGVTSATS ASGPLNMSVF DNAIAGGVTQ THNGCNNNNY DYLDDMMTAL  540
IKREQNEGLI IDPDLGLDAY QMGPSPHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-21224280157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP625984e-91ARR12_ARATH; Two-component response regulator ARR12
STRINGLus100363030.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144041618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-91response regulator 12
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Cortleven A, et al.
    A novel protective function for cytokinin in the light stress response is mediated by the Arabidopsis histidine kinase2 and Arabidopsis histidine kinase3 receptors.
    Plant Physiol., 2014. 164(3): p. 1470-83
    [PMID:24424319]
  3. Kim HJ,Kieber JJ,Schaller GE
    The rice F-box protein KISS ME DEADLY2 functions as a negative regulator of cytokinin signalling.
    Plant Signal Behav, 2013. 8(12): p. e26434
    [PMID:24675172]
  4. Choi SH, et al.
    Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis.
    Sci Rep, 2014. 4: p. 7197
    [PMID:25425016]
  5. Jiang L, et al.
    Strigolactones spatially influence lateral root development through the cytokinin signaling network.
    J. Exp. Bot., 2016. 67(1): p. 379-89
    [PMID:26519957]
  6. Cortleven A, et al.
    Cytokinin Regulates the Etioplast-Chloroplast Transition through the Two-Component Signaling System and Activation of Chloroplast-Related Genes.
    Plant Physiol., 2016. 172(1): p. 464-78
    [PMID:27388681]
  7. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  8. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  9. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  10. Kobayashi K,Iwase A
    Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal.
    Plant Signal Behav, 2017. 12(6): p. e1338999
    [PMID:28594268]
  11. Dai X, et al.
    ARR12 promotes de novo shoot regeneration in Arabidopsis thaliana via activation of WUSCHEL expression.
    J Integr Plant Biol, 2017. 59(10): p. 747-758
    [PMID:28681564]
  12. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  13. Yan Z, et al.
    Type B Response Regulators Act As Central Integrators in Transcriptional Control of the Auxin Biosynthesis Enzyme TAA1.
    Plant Physiol., 2017. 175(3): p. 1438-1454
    [PMID:28931628]
  14. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]