PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036286
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 311aa    MW: 32337.3 Da    PI: 4.8045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036286genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-091351741155
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Lus10036286 135 LRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 174
                  6******************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.802124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-13134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-7134179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-6135174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-9136178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQPCSREMAA GLNSLLNDLH HFDPSSAASA DDFLDHLMLS AIPPSNVGAA WATGADLVKS  60
PWADLTSDDD TLNHNVAGFF EDSATFNLAS KLRHHQISGD GNSVHALFNG FSAGSILPAT  120
APLSEPHFNL PPSQLRRERI AERMKSLQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKVL  180
SMSRLGGAAA VAPLVVDMSS EGGGGGGGDC IQTTGTTAGA NGGASNDNSL TMTEHQVAKL  240
MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCTNHRQPS SPNVSVLTMQ SATMGNGTAG  300
GDVKDVVSAP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036286
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8851017e-47HQ885101.1 Linum usitatissimum clone Contig951 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033445.14e-94PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG92e-66BH066_ARATH; Transcription factor bHLH66
TrEMBLB9IMF54e-92B9IMF5_POPTR; Uncharacterized protein
STRINGLus100362860.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-60LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]