PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036141
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 502aa    MW: 54682.9 Da    PI: 7.1713
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036141genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.74.6e-11164230155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpse....ng....kr....krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+ ++     ++    +r    + ++ g f+ta  Aa+a+++a+ k++g
  Lus10036141 164 SQYRGVTFYRRTGRWESHIWYYCLlwtaGNrfiwVRillvAFVHSGGFDTAHAAARAYDRAAIKFRG 230
                  78******************98778997446999445789************************997 PP
2AP240.66.2e-13273323155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ + +g
  Lus10036141 273 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAINCNG 323
                  89********.7******5553..2.26**********99*********988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-4164230IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-9164238IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-9165238IPR001471AP2/ERF domain
SMARTSM003801.4E-18165244IPR001471AP2/ERF domain
PROSITE profilePS5103214.421165238IPR001471AP2/ERF domain
CDDcd000181.61E-24273333No hitNo description
PfamPF008471.7E-8273323IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-16273332IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-15274331IPR001471AP2/ERF domain
SMARTSM003802.9E-30274337IPR001471AP2/ERF domain
PROSITE profilePS5103215.237274331IPR001471AP2/ERF domain
PRINTSPR003671.3E-5275286IPR001471AP2/ERF domain
PRINTSPR003671.3E-5313333IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MLDLNLNVES AESAHDSYSV SFVENKYECH MLQPEASGTS NSSVVNADVS SNEESCSTRA  60
EAANNNGSYR SGGNPIRAFN FDIIKVDTDE ADVVVTKDFF PVSHGKLESG GGFLCPPGNW  120
IDLTFHRQEE IASGGGGNGG AVRVIHQASQ QAKKSRRGPR SRSSQYRGVT FYRRTGRWES  180
HIWYYCLLWT AGNRFIWVRI LLVAFVHSGG FDTAHAAARA YDRAAIKFRG VDADINFSLG  240
DYEEDMEQMK NLAKDEFVHI LRRQSTGFSR GSSKYRGVTL HKCGRWEARM GQFLGKKYIY  300
LGLFDSEVEA ARAYDKAAIN CNGREAVTNF EPSTYVGEMP SDSRIEGTGH NLNLNLAISP  360
SLAGCSMETG GQLPFHSKME NRMGKMVSNG LATMTDHAMP VNGAYATFFK SEERGTEKII  420
GEASSKSAYG LMALFPTTAA SSGFSASANF HHPSPPISAS EPFHQATATA AAHVFGLGPS  480
AIALPSNGSQ FYYSTNLHQP H*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036141
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021639510.11e-149ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK032e-91RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A067L6P31e-147A0A067L6P3_JATCU; Uncharacterized protein
STRINGLus100361410.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-98related to AP2.7