PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10036062
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 317aa    MW: 36543.6 Da    PI: 6.7093
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10036062genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.12.8e-33361312102
                   HHHHHHHHHCTGGGTTTSEESSSS....SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswseng....nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                   Fl+k+ye+++d+ +++++sw +n     ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv  e+         weF +++F+kg k+ll
   Lus10036062  36 FLTKTYELVDDPMTDHIVSWGSNMndpmSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVAER---------WEFGNDYFRKGAKQLL 123
                   9********************776577789***************************************999.........**************** PP

                   XXXXXXXX CS
  HSF_DNA-bind  95 ekikrkks 102
                   ++i+r+ks
   Lus10036062 124 SHIHRRKS 131
                   ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-4932129IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.31E-2933129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.5E-3433129IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-2836129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-113659IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-1191103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MQRSCNEEEE EEEEEEEESI IMQGLNKGGG GVVAPFLTKT YELVDDPMTD HIVSWGSNMN  60
DPMSTFVVWR PPEFARDLLP NYFKHNNFSS FVRQLNTYGF KKVVAERWEF GNDYFRKGAK  120
QLLSHIHRRK SPHHHHHHHH NDHHHHYHNH DFIFQLPPPN YINPHHQPHH IFLPPAAAAV  180
HSDDDDEMMM LSTLSEDNQR LKKRNLALLS ELSHMKSLYN DIIYFIQNHL KPNHPFPHHH  240
HHPPTTTTAT NNNNNNNKLV ELQDLSDDTK EDDRDGGGCS GAVKLFGVSL CGKKRQLHSD  300
HHFTALPPPL SSSSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-193312917120Heat shock factor protein 1
5d5u_B4e-193312926129Heat shock factor protein 1
5d5v_B4e-193312926129Heat shock factor protein 1
5d5v_D4e-193312926129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10036062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368557.13e-86heat stress transcription factor B-4b-like
SwissprotQ9C6356e-78HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2K3LMR41e-84A0A2K3LMR4_TRIPR; Heat stress transcription factor b-4-like protein
STRINGLus100360620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.16e-70heat shock transcription factor B4