 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Lus10036032 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
| Family |
SRS |
| Protein Properties |
Length: 257aa MW: 27552 Da PI: 8.3368 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10036032 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 212.2 | 1.2e-65 | 79 | 243 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaa.asaaeaaskrkrel.kskkqsalsstklssaeskk 98
s ta+CqdCGnqakkdC h+RCRtCCksrgfdCathvkstWvp+a+rrerq ++aa++ +sa+++ k++r +++++++ s+t++s++++++
Lus10036032 79 SSTATCQDCGNQAKKDCPHRRCRTCCKSRGFDCATHVKSTWVPSARRRERQLMTAATAGGGGcSSASTSGVKKPRLIgSQTTATTNSHTSTSNTTPSR 176
67899*********************************************999888776655145578888999988555667777889999999999 PP
DUF702 99 eletss............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+ +t+s lP +v+++avf+cvrv++v+dge+e+aYq+av+igGh+fkG+LydqG+e
Lus10036032 177 SYDTTSshhhqdagfretLPGQVRAAAVFKCVRVTAVEDGEDEYAYQAAVKIGGHLFKGVLYDQGVE 243
99998899*********************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MEGGDDDNHH NLFQRKIGSS SSSGIQFWQH YNNSIKKNNP PSSSILDPNN NTNNNNNNNN 60
NLPQSTGVVM NSMMATSSSS TATCQDCGNQ AKKDCPHRRC RTCCKSRGFD CATHVKSTWV 120
PSARRRERQL MTAATAGGGG CSSASTSGVK KPRLIGSQTT ATTNSHTSTS NTTPSRSYDT 180
TSSHHHQDAG FRETLPGQVR AAAVFKCVRV TAVEDGEDEY AYQAAVKIGG HLFKGVLYDQ 240
GVEGRGADGN FPDDEL*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 4e-61 | Lateral root primordium (LRP) protein-related |
